miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01062;MIR812;AC136218.2/76973-77145 39947:Oryza sativa Japonica
Group
Length = 173
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tgtactacctccgtcccaaaataa 38
||||||||||||||||||||||||
Sbjct: 150 tgtactacctccgtcccaaaataa 173
>RF00906;MIR1122;AACV01000413.1/31680-31766 39947:Oryza sativa
Japonica Group
Length = 87
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 14 ttgtactacctccgtcccaaaata 37
||||||||||||||||||||||||
Sbjct: 86 ttgtactacctccgtcccaaaata 63
>RF00906;MIR1122;AC145396.3/122873-122984 39947:Oryza sativa
Japonica Group
Length = 112
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 tttgtactacctccgtcccaaaat 36
||||||||||||||||||||||||
Sbjct: 1 tttgtactacctccgtcccaaaat 24
>RF01058;MIR806;AACV01004692.1/2655-2900 39947:Oryza sativa Japonica
Group
Length = 246
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 gtactacctccgtcccaaaataa 38
|||||||||||||||||||||||
Sbjct: 246 gtactacctccgtcccaaaataa 224
>RF01058;MIR806;AAAA02004537.1/25464-25706 39946:Oryza sativa Indica
Group
Length = 243
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 gtactacctccgtcccaaaataa 38
|||||||||||||||||||||||
Sbjct: 243 gtactacctccgtcccaaaataa 221
>RF01058;MIR806;AP004672.3/126730-126486 39947:Oryza sativa Japonica
Group
Length = 245
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 gtactacctccgtcccaaaataa 38
|||||||||||||||||||||||
Sbjct: 245 gtactacctccgtcccaaaataa 223
>RF01058;MIR806;AACV01005022.1/1990-2230 39947:Oryza sativa
Japonica Group
Length = 241
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 gtactacctccgtcccaaaataa 38
|||||||||||||||||||||||
Sbjct: 1 gtactacctccgtcccaaaataa 23
>RF00906;MIR1122;AACV01002938.1/10208-10316 39947:Oryza sativa
Japonica Group
Length = 109
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgtactacctccgtcccaaaata 37
|||||||||||||||||||||||
Sbjct: 3 tgtactacctccgtcccaaaata 25
>RF00906;MIR1122;AACV01006837.1/19056-19167 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tgtactacctccgtcccaaaata 37
|||||||||||||||||||||||
Sbjct: 3 tgtactacctccgtcccaaaata 25
