miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00073;mir-156;ABIM01007853.1/18159-18072 3649:Carica papaya
(papaya)
Length = 88
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacccatgg 37
||||||||||||||||||||||||||
Sbjct: 2 tgacagaagagagtgagcacccatgg 27
>RF00073;mir-156;AM455203.2/879-962 29760:Vitis vinifera
Length = 84
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 gtgacagaagagagtgagcacccatggtct 40
||||||||||||||||||||| ||||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggtct 30
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 66 tgcttgaagctatgcgtgctcaccctctgtctgtca 101
||||||||||| ||||||||||| |||| |||||||
Sbjct: 48 tgcttgaagctctgcgtgctcactctctatctgtca 83
>RF00073;mir-156;EU548379.1/158-255 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 gtgacagaagagagtgagcacccatggt 38
||||||||||||||||||||| ||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;EU548405.1/118-209 3702:Arabidopsis thaliana
(thale cress)
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 gtgacagaagagagtgagcacccatggt 38
||||||||||||||||||||| ||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AASG02007740.1/7202-7285 3988:Ricinus communis
(castor bean)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 gtgacagaagagagtgagcacccatggt 38
||||||||||||||||||||| ||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AASG02002418.1/21340-21254 3988:Ricinus communis
(castor bean)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 gtgacagaagagagtgagcacccatggt 38
||||||||||||||||||||| ||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AC152551.33/14978-14893 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 gtgacagaagagagtgagcacccatggt 38
||||||||||||||||||||| ||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AP010362.1/32796-32877 34305:Lotus japonicus
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 gtgacagaagagagtgagcacccatggt 38
||||||||||||||||||||| ||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AP009515.1/86721-86633 4081:Solanum lycopersicum
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 gtgacagaagagagtgagcacccatggt 38
||||||||||||||||||||| ||||||
Sbjct: 1 gtgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;AP009602.1/6441-6354 4081:Solanum lycopersicum
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 gtgacagaagagagtgagcacccatggtcttt 42
||||||||||||||||||||| |||||||||
Sbjct: 1 gtgacagaagagagtgagcacatatggtcttt 32
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 66 tgcttgaagctatgcgtgctcac 88
|||||||||||||||||||||||
Sbjct: 51 tgcttgaagctatgcgtgctcac 73
>RF00073;mir-156;AB108111.1/202-100 15957:Phleum pratense (timothy
grass)
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacccatggt 38
|||||||||||||||||||| ||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
>RF00073;mir-156;EU004241.2/110-202 4529:Oryza rufipogon
Length = 93
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 12 tgacagaagagagtgagcacccatggt 38
|||||||||||||||||||| ||||||
Sbjct: 2 tgacagaagagagtgagcacacatggt 28
