miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|P93111|HEM11_CUCSA Glutamyl-tRNA reductase 1, chloroplastic
OS=Cucumis sativus GN=HEMA1 PE=2 SV=1
Length = 552
Score = 56.6 bits (135), Expect(2) = 2e-11
Identities = 27/29 (93%), Positives = 27/29 (93%)
Frame = +2
Query: 2 VSQGVAGFGRNISGLFKHAIMVGKRVRTE 88
V QGVAGFGRNISGLFKHAI VGKRVRTE
Sbjct: 228 VGQGVAGFGRNISGLFKHAITVGKRVRTE 256
Score = 31.6 bits (70), Expect(2) = 2e-11
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +1
Query: 88 TKIAEGXXXXXXXXXELALMKLPNSAHSTAR 180
T IA G ELALMKLP +H+TAR
Sbjct: 257 TNIAAGAVSVSSAAVELALMKLPEPSHATAR 287
>sp|P49294|HEM12_ARATH Glutamyl-tRNA reductase 2, chloroplastic
OS=Arabidopsis thaliana GN=HEMA2 PE=2 SV=2
Length = 530
Score = 54.3 bits (129), Expect(2) = 5e-10
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = +2
Query: 2 VSQGVAGFGRNISGLFKHAIMVGKRVRTE 88
V QGV GFGRNISGLFKHAI VGKRVRTE
Sbjct: 212 VGQGVNGFGRNISGLFKHAITVGKRVRTE 240
Score = 28.9 bits (63), Expect(2) = 5e-10
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 88 TKIAEGXXXXXXXXXELALMKLPNSAHSTA 177
T IA G ELALMKLP S+H+++
Sbjct: 241 TNIAAGAVSVSSAAVELALMKLPESSHASS 270
>sp|P42804|HEM11_ARATH Glutamyl-tRNA reductase 1, chloroplastic
OS=Arabidopsis thaliana GN=HEMA1 PE=1 SV=2
Length = 543
Score = 54.3 bits (129), Expect(2) = 6e-10
Identities = 26/29 (89%), Positives = 26/29 (89%)
Frame = +2
Query: 2 VSQGVAGFGRNISGLFKHAIMVGKRVRTE 88
V QGV GFGRNISGLFKHAI VGKRVRTE
Sbjct: 221 VGQGVNGFGRNISGLFKHAITVGKRVRTE 249
Score = 28.5 bits (62), Expect(2) = 6e-10
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +1
Query: 88 TKIAEGXXXXXXXXXELALMKLPNSAHSTAR 180
T IA G ELALMKLP S++ +AR
Sbjct: 250 TNIASGAVSVSSAAVELALMKLPQSSNVSAR 280
>sp|P49295|HEM12_CUCSA Glutamyl-tRNA reductase 2, chloroplastic
OS=Cucumis sativus GN=HEMA2 PE=2 SV=1
Length = 542
Score = 50.1 bits (118), Expect(2) = 1e-07
Identities = 24/27 (88%), Positives = 24/27 (88%)
Frame = +2
Query: 8 QGVAGFGRNISGLFKHAIMVGKRVRTE 88
QGVAGF R ISGLFKHAI VGKRVRTE
Sbjct: 222 QGVAGFDRKISGLFKHAITVGKRVRTE 248
Score = 24.6 bits (52), Expect(2) = 1e-07
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 88 TKIAEGXXXXXXXXXELALMKLPNSAHSTAR 180
T I+ G ELA KLP S+++TA+
Sbjct: 249 TNISSGSFSVSSAAVELAQKKLPESSYATAK 279
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q38896|GRP2B_ARATH Glycine-rich protein 2b OS=Arabidopsis
thaliana GN=GRP2B PE=2 SV=1
Length = 201
Score = 47.0 bits (110), Expect = 9e-05
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = +3
Query: 3 GGGRGGGEDLKCYECGEPGHFAREC 77
GGG GGG L CY CGE GHFAR+C
Sbjct: 171 GGGGGGGGGLSCYSCGESGHFARDC 195
Score = 44.7 bits (104), Expect = 4e-04
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +3
Query: 3 GGGRGGGEDLKCYECGEPGHFAREC 77
GG GGG D C++CGEPGH AREC
Sbjct: 127 GGRGGGGGDNSCFKCGEPGHMAREC 151
>sp|P27484|GRP2_NICSY Glycine-rich protein 2 OS=Nicotiana sylvestris
GN=GRP-2 PE=2 SV=1
Length = 214
Score = 44.7 bits (104), Expect = 4e-04
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = +3
Query: 3 GGGRGGGEDLKCYECGEPGHFAREC 77
GGG GGG CY+CGE GHFAREC
Sbjct: 185 GGGGGGGGGGGCYKCGEDGHFAREC 209
