miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AASG02001979.1/7364-7257 3988:Ricinus communis
(castor bean)
Length = 108
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 61 actgccaagggagatttgccctgcaattcatc 92
|||||||| |||||||||||| ||||||||||
Sbjct: 76 actgccaaaggagatttgccccgcaattcatc 107
>RF00445;mir-399;AC004481.3/13564-13465 3702:Arabidopsis thaliana
(thale cress)
Length = 100
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 62 ctgccaagggagatttgccctgcaattcatc 92
||||||| |||||||||||| ||||||||||
Sbjct: 69 ctgccaaaggagatttgccccgcaattcatc 99
>RF00445;mir-399;AARH01002119.1/17334-17454 3694:Populus trichocarpa
Length = 121
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 62 ctgccaagggagatttgccctgcaattcatc 92
||||||| |||||||||||| ||||||||||
Sbjct: 90 ctgccaaaggagatttgccccgcaattcatc 120
>RF00445;mir-399;EU626442.1/66161-66296 29730:Gossypium raimondii
Length = 136
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 61 actgccaagggagatttgccctgcaattca 90
|||||||| |||||||||||| ||||||||
Sbjct: 104 actgccaaaggagatttgccccgcaattca 133
>RF00445;mir-399;AY632360.1/45897-46033 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 61 actgccaagggagatttgccctgcaattca 90
|||||||| |||||||||||| ||||||||
Sbjct: 105 actgccaaaggagatttgccccgcaattca 134
>RF00445;mir-399;AY632359.1/44840-44976 3635:Gossypium hirsutum
(upland cotton)
Length = 137
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 61 actgccaagggagatttgccctgcaattca 90
|||||||| |||||||||||| ||||||||
Sbjct: 105 actgccaaaggagatttgccccgcaattca 134
>RF00445;mir-399;EU626443.1/56309-56427 47615:Gossypioides kirkii
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 61 actgccaagggagatttgccctgcaattca 90
|||||||| |||||||||||| ||||||||
Sbjct: 87 actgccaaaggagatttgccccgcaattca 116
>RF00445;mir-399;ABIM01002717.1/22515-22407 3649:Carica papaya
(papaya)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 61 actgccaagggagatttgccctgcaattca 90
|||||||| |||||||||||| ||||||||
Sbjct: 77 actgccaaaggagatttgcccggcaattca 106
>RF00445;mir-399;AASG02004610.1/1319-1202 3988:Ricinus communis
(castor bean)
Length = 118
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 62 ctgccaagggagatttgccctgcaat 87
|||||||||||||||||||| |||||
Sbjct: 87 ctgccaagggagatttgcccggcaat 112
