miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AY853252.1/217307-217173 4513:Hordeum vulgare
Length = 135
Score = 73.8 bits (37), Expect = 6e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 63 atgtatttagacatgttttagtgttagatacatccgtatctagataaat 111
|||||| ||| || |||||||||||||||||||||||||||||||||||
Sbjct: 52 atgtatctagtcacgttttagtgttagatacatccgtatctagataaat 100
>RF00906;MIR1122;EU862588.1/607-710 4516:Hordeum bulbosum
Length = 104
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 79 tttagtgttagatacatccgtatctagataaat 111
|||||||||||||||||||||||||||||||||
Sbjct: 37 tttagtgttagatacatccgtatctagataaat 69
>RF00906;MIR1122;EU862571.1/695-592 98113:Hordeum murinum subsp.
glaucum
Length = 104
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 79 tttagtgttagatacatccgtatctagataaat 111
||||| |||||||||||||||||||||||||||
Sbjct: 68 tttagcgttagatacatccgtatctagataaat 36
>RF00906;MIR1122;AY485644.1/84291-84425 4568:Triticum monococcum
Length = 135
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 78 ttttagtgttagatacatccgtatcta 104
|||||||||||||||||||||||||||
Sbjct: 67 ttttagtgttagatacatccgtatcta 93
>RF00906;MIR1122;AY821733.1/621-487 4568:Triticum monococcum
Length = 135
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 77 gttttagtgttagatacatccgtatctag 105
|||||||| ||||||||||||||||||||
Sbjct: 66 gttttagtattagatacatccgtatctag 94
>RF00906;MIR1122;DQ145528.1/676-542 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 135
Score = 50.1 bits (25), Expect = 9e-06
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 47 atttgtctagatataaatgtatttagacatgttttagt-gttagatacatccgtatctag 105
||||||||| |||| ||||||| ||| ||||||||||| |||||||||||| | |||||
Sbjct: 36 atttgtctaaatatgaatgtatctagtcatgttttagtatttagatacatccatttctag 95
Query: 106 a 106
|
Sbjct: 96 a 96
>RF00906;MIR1122;FJ374610.1/683-817 4568:Triticum monococcum
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 77 gttttagtgttagatacatccgtatctagataaat 111
|||||||| |||||||||||| |||||||| ||||
Sbjct: 66 gttttagtattagatacatccatatctagacaaat 100
>RF00906;MIR1122;AM932683.1/23310-23434 4565:Triticum aestivum
(bread wheat)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 63 atgtatttagacatgttttagtgttagatacatcc 97
|||||||||||||| ||||||| |||||| |||||
Sbjct: 42 atgtatttagacatattttagttttagatgcatcc 76
>RF00906;MIR1122;AJ704455.1/466-601 4513:Hordeum vulgare
Length = 136
Score = 46.1 bits (23), Expect = 1e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 46 catttgtctagatataaatgtatttagacatgttttagt 84
||||||||||||||| ||||||| ||| || ||||||||
Sbjct: 35 catttgtctagatatgaatgtatctagtcacgttttagt 73
>RF00906;MIR1122;EU660901.1/93085-92951 4565:Triticum aestivum
(bread wheat)
Length = 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 77 gttttagtgttagatacatccgtatctaga 106
||||| || |||||||||||||||||||||
Sbjct: 66 gtttttgtattagatacatccgtatctaga 95
>RF00906;MIR1122;AY465427.2/1983-1848 4567:Triticum turgidum subsp.
durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 6e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 79 tttagtgt-tagatacatccgtatctagataaat 111
|||||||| ||||||||||||| |||||||||||
Sbjct: 67 tttagtgtctagatacatccgtgtctagataaat 100
>RF00906;MIR1122;EU660894.1/143713-143848 4567:Triticum turgidum
subsp. durum (durum wheat)
Length = 136
Score = 44.1 bits (22), Expect = 6e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 47 atttgtctagatataaatgtatttagacatgttttagt 84
||||||| | ||||| |||||| |||||||||||||||
Sbjct: 36 atttgtcaaaatatatatgtatctagacatgttttagt 73
>RF00906;MIR1122;AF277239.1/1056-1190 37679:Heteranthelium piliferum
Length = 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 63 atgtatttagacatgttttagtgttagatacatccgtatcta 104
|||||| ||| ||||||||||||||||| |||| | ||||||
Sbjct: 52 atgtatctagtcatgttttagtgttagacacattcatatcta 93
