miRNEST 2.0, an integrative microRNA resource :: BLAST
>41463_ptc-MIR408:mirbase
Length = 105
Score = 79.8 bits (40), Expect = 4e-16
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 17 gggaacagacagagcatgaatggaactactaacacgtttacctgtttctgctctacccat 76
|||||||| ||||||||| ||||| ||||||||| ||| ||||| |||||||||||
Sbjct: 18 gggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctacccat 77
Query: 77 gcactgcctcttccctggct 96
||||||||||||||||||||
Sbjct: 78 gcactgcctcttccctggct 97
>41683_vvi-MIR408:mirbase
Length = 107
Score = 73.8 bits (37), Expect = 2e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 58 ctgtttctgctctacccatgcactgcctcttccctggctct 98
|||||| ||||||||||||||||||||||||||||||||||
Sbjct: 60 ctgtttttgctctacccatgcactgcctcttccctggctct 100
>41252_csi-MIR408:mirbase
Length = 153
Score = 63.9 bits (32), Expect = 2e-11
Identities = 72/84 (85%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 17 gggaacagacagagcatgaatggaactactaacacgtttacctgtttctgctctacccat 76
|||||||| ||||||||| ||||||| | ||||| ||| | ||||| |||| |||||
Sbjct: 63 gggaacaggcagagcatggatggaaccattaacaggttctc-tgttttggctcctcccat 121
Query: 77 gcactgcctcttccctggctctct 100
||||||||||||||||||||||||
Sbjct: 122 gcactgcctcttccctggctctct 145
>40108_ath-MIR408:mirbase
Length = 218
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 67 ctctacccatgcactgcctcttccctggctc 97
|||||||||||||||||||||||||||||||
Sbjct: 112 ctctacccatgcactgcctcttccctggctc 142
>39897_aly-MIR408:mirbase
Length = 211
Score = 61.9 bits (31), Expect = 9e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 67 ctctacccatgcactgcctcttccctggctc 97
|||||||||||||||||||||||||||||||
Sbjct: 109 ctctacccatgcactgcctcttccctggctc 139
>40405_ahy-MIR408:mirbase
Length = 122
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 74 catgcactgcctcttccctggctctctc 101
||||||||||||||||||||||||||||
Sbjct: 80 catgcactgcctcttccctggctctctc 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 17 gggaacagacagagcatgaatggaacta 44
|||||||| |||||||||||||||||||
Sbjct: 23 gggaacaggcagagcatgaatggaacta 50
>40404_ahy-MIR408:mirbase
Length = 122
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 74 catgcactgcctcttccctggctctctc 101
||||||||||||||||||||||||||||
Sbjct: 80 catgcactgcctcttccctggctctctc 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 17 gggaacagacagagcatgaatggaacta 44
|||||||| |||||||||||||||||||
Sbjct: 23 gggaacaggcagagcatgaatggaacta 50
>40391_rco-MIR408:mirbase
Length = 92
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 66 gctctacccatgcactgcctcttccctggct 96
||||||||| |||||||||||||||||||||
Sbjct: 58 gctctacccctgcactgcctcttccctggct 88
>41193_aqc-MIR408:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 73 ccatgcactgcctcttccctggct 96
||||||||||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggct 1
>42474_ssp-MIR408d:mirbase
Length = 180
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 acccatgcactgcctcttccctggctc 97
|||| ||||||||||||||||||||||
Sbjct: 154 acccctgcactgcctcttccctggctc 180
>42465_sof-MIR408d:mirbase
Length = 215
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 71 acccatgcactgcctcttccctggctc 97
|||| ||||||||||||||||||||||
Sbjct: 172 acccctgcactgcctcttccctggctc 198
>39490_ppt-MIR408b:mirbase
Length = 144
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 74 catgcactgcctcttccctggct 96
|||||||||||||||||||||||
Sbjct: 92 catgcactgcctcttccctggct 114
>39428_pta-MIR408:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 75 atgcactgcctcttccctggctc 97
|||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggctc 86
>42830_zma-MIR408b:mirbase
Length = 147
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 126 tgcactgcctcttccctggctc 147
>42829_zma-MIR408:mirbase
Length = 191
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggctc 174
>42647_tae-MIR408:mirbase
Length = 187
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggctc 158
>42473_ssp-MIR408a:mirbase
Length = 248
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 227 tgcactgcctcttccctggctc 248
>42464_sof-MIR408c:mirbase
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>42463_sof-MIR408b:mirbase
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggctc 269
>42462_sof-MIR408a:mirbase
Length = 283
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggctc 266
>42052_osa-MIR408:mirbase
Length = 213
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggctc 97
||||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggctc 175
>39742_smo-MIR408:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 atgcactgcctcttccctggct 96
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>42600_sbi-MIR408:mirbase
Length = 205
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 76 tgcactgcctcttccctggct 96
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
