miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
Length = 166
Score = 85.7 bits (43), Expect = 3e-16
Identities = 54/57 (94%), Gaps = 3/57 (5%)
Strand = Plus / Plus
Query: 215 tcatcacttcatgcatgggatattgagactgatctcggaccaggcttcattcctcac 271
||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 110 tcatcacttcatgcatgggat---gagactgatctcggaccaggcttcattcctcac 163
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 139 aatgaggtttgatccaagatcataacatcat 169
||||||||||||||||||||||| |||||||
Sbjct: 10 aatgaggtttgatccaagatcatcacatcat 40
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
(barrel medic)
Length = 181
Score = 69.9 bits (35), Expect = 2e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 233 gatattgagactgatctcggaccaggcttcattcctcac 271
|||||||||| ||||||||||||||||||||||||||||
Sbjct: 140 gatattgagagtgatctcggaccaggcttcattcctcac 178
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 58.0 bits (29), Expect = 7e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 239 gagactgatctcggaccaggcttcattcc 267
|||||||||||||||||||||||||||||
Sbjct: 68 gagactgatctcggaccaggcttcattcc 96
>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
cotton)
Length = 113
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 245 gatctcggaccaggcttcattcctcac 271
|||||||||||||||||||||||||||
Sbjct: 84 gatctcggaccaggcttcattcctcac 110
>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus trichocarpa
Length = 317
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 242 actgatctcggaccaggcttcattcct 268
|||||||||||||||||||||||||||
Sbjct: 285 actgatctcggaccaggcttcattcct 311
>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 237 ttgagactgatctcggaccaggcttcattcc 267
|||||| ||||||||||||||||||||||||
Sbjct: 55 ttgagaatgatctcggaccaggcttcattcc 85
>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
Japonica Group
Length = 135
Score = 54.0 bits (27), Expect = 1e-06
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 245 gatctcggaccaggcttcattcctcac 271
|||||||||||||||||||||||||||
Sbjct: 106 gatctcggaccaggcttcattcctcac 132
>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus trichocarpa
Length = 324
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 244 tgatctcggaccaggcttcattcct 268
|||||||||||||||||||||||||
Sbjct: 294 tgatctcggaccaggcttcattcct 318
>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
Length = 122
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 244 tgatctcggaccaggcttcattcct 268
|||||||||||||||||||||||||
Sbjct: 92 tgatctcggaccaggcttcattcct 116
>RF00075;mir-166;ABXC01005455.1/25016-25131 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 247 tctcggaccaggcttcattcctcac 271
|||||||||||||||||||||||||
Sbjct: 89 tctcggaccaggcttcattcctcac 113
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 244 tgatctcggaccaggcttcattcc 267
||||||||||||||||||||||||
Sbjct: 95 tgatctcggaccaggcttcattcc 118
>RF00075;mir-166;ABIM01018276.1/2199-2062 3649:Carica papaya
(papaya)
Length = 138
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 244 tgatctcggaccaggcttcattcc 267
||||||||||||||||||||||||
Sbjct: 108 tgatctcggaccaggcttcattcc 131
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus trichocarpa
Length = 94
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 244 tgatctcggaccaggcttcattcc 267
||||||||||||||||||||||||
Sbjct: 64 tgatctcggaccaggcttcattcc 87
>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus trichocarpa
Length = 92
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 244 tgatctcggaccaggcttcattcc 267
||||||||||||||||||||||||
Sbjct: 62 tgatctcggaccaggcttcattcc 85
>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
(castor bean)
Length = 94
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 244 tgatctcggaccaggcttcattcc 267
||||||||||||||||||||||||
Sbjct: 64 tgatctcggaccaggcttcattcc 87
>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
Length = 90
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 244 tgatctcggaccaggcttcattcc 267
||||||||||||||||||||||||
Sbjct: 60 tgatctcggaccaggcttcattcc 83
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 244 tgatctcggaccaggcttcattcc 267
||||||||||||||||||||||||
Sbjct: 67 tgatctcggaccaggcttcattcc 90
>RF00075;mir-166;AC155889.2/42101-41932 3880:Medicago truncatula
(barrel medic)
Length = 170
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 246 atctcggaccaggcttcattcct 268
|||||||||||||||||||||||
Sbjct: 142 atctcggaccaggcttcattcct 164
>RF00075;mir-166;CT009488.4/103389-103285 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 247 tctcggaccaggcttcattcctc 269
|||||||||||||||||||||||
Sbjct: 78 tctcggaccaggcttcattcctc 100
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 245 gatctcggaccaggcttcattcc 267
|||||||||||||||||||||||
Sbjct: 90 gatctcggaccaggcttcattcc 112
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 245 gatctcggaccaggcttcattcc 267
|||||||||||||||||||||||
Sbjct: 85 gatctcggaccaggcttcattcc 107
>RF00075;mir-166;AY664417.1/307265-307178 4577:Zea mays
Length = 88
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 247 tctcggaccaggcttcattcctc 269
|||||||||||||||||||||||
Sbjct: 61 tctcggaccaggcttcattcctc 83
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 245 gatctcggaccaggcttcattcc 267
|||||||||||||||||||||||
Sbjct: 68 gatctcggaccaggcttcattcc 90
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 245 gatctcggaccaggcttcattcc 267
|||||||||||||||||||||||
Sbjct: 95 gatctcggaccaggcttcattcc 117
>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
Length = 212
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 245 gatctcggaccaggcttcattcc 267
|||||||||||||||||||||||
Sbjct: 185 gatctcggaccaggcttcattcc 207
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 245 gatctcggaccaggcttcattcc 267
|||||||||||||||||||||||
Sbjct: 89 gatctcggaccaggcttcattcc 111
>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
(sorghum)
Length = 191
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 245 gatctcggaccaggcttcattcc 267
|||||||||||||||||||||||
Sbjct: 162 gatctcggaccaggcttcattcc 184
>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 160
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 245 gatctcggaccaggcttcattcc 267
|||||||||||||||||||||||
Sbjct: 131 gatctcggaccaggcttcattcc 153
>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
Indica Group
Length = 180
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 245 gatctcggaccaggcttcattcc 267
|||||||||||||||||||||||
Sbjct: 151 gatctcggaccaggcttcattcc 173
>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
Group
Length = 179
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 245 gatctcggaccaggcttcattcc 267
|||||||||||||||||||||||
Sbjct: 150 gatctcggaccaggcttcattcc 172
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 245 gatctcggaccaggcttcattcc 267
|||||||||||||||||||||||
Sbjct: 92 gatctcggaccaggcttcattcc 114
>RF00075;mir-166;AC138001.2/40361-40495 39947:Oryza sativa Japonica
Group
Length = 135
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 245 gatctcggaccaggcttcattcctcac 271
||||||||| |||||||||||||||||
Sbjct: 106 gatctcggatcaggcttcattcctcac 132
