miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 85.7 bits (43), Expect = 2e-16
Identities = 80/90 (88%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 31 ctggacgcagcggttcatcgatctcttcct--gaatttggctgtggaagaacacaaaaca 88
||||| |||||||||||||||||||||||| |||||||| |||| || | |||| ||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctgggaatttgg-tgtgaaaaatcacagaaca 61
Query: 89 agaatcggtcgataaacctctgcatccagc 118
|||||| ||||||||||||||||||||||
Sbjct: 62 tgaatcgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 79.8 bits (40), Expect = 9e-15
Identities = 78/88 (88%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 31 ctggacgcagcggttcatcgatctcttcctgaatttggctgtggaagaacacaaaacaag 90
||||| ||||||||||||||||||||||||||| ||| |||| || || || | ||||
Sbjct: 3 ctggatgcagcggttcatcgatctcttcctgaaattgt-tgtgaaaaaag-cagatcaag 60
Query: 91 aatcggtcgataaacctctgcatccagc 118
||||||||||||||||||||||||||||
Sbjct: 61 aatcggtcgataaacctctgcatccagc 88
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 84 aaacaagaatcggtcgataaacctctgcatccagc 118
||||| |||||||||||||||||||||||||||||
Sbjct: 56 aaacatgaatcggtcgataaacctctgcatccagc 90
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 29 cgctggacgcagcggttcatcgatctcttcctg 61
||||||| |||||||||||||||||||||||||
Sbjct: 1 cgctggaggcagcggttcatcgatctcttcctg 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 97 tcgataaacctctgcatccagc 118
||||||||||||||||||||||
Sbjct: 67 tcgataaacctctgcatccagc 88
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 90 gaatcggtcgataaacctctgcatccagc 118
|||||||||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 87 caagaatcggtcgataaacctctgcatccagc 118
||||||||| ||||||||||||||||||||||
Sbjct: 60 caagaatcgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 31 ctggacgcagcggttcatcgatctcttcctg 61
||||| |||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 83 aaaacaagaatcggtcgataaacctctgcatccagc 118
|||||| ||| || ||||||||||||||||||||||
Sbjct: 56 aaaacatgaaccgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 31 ctggacgcagcggttcatcgatctcttcctg 61
||||| |||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 90 gaatcggtcgataaacctctgcatccagc 118
|||||| ||||||||||||||||||||||
Sbjct: 68 gaatcgatcgataaacctctgcatccagc 96
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 31 ctggacgcagcggttcatcgatctcttcctgaa 63
||||| |||||||||||||||||| ||||||||
Sbjct: 3 ctggaggcagcggttcatcgatcttttcctgaa 35
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 90 gaatcggtcgataaacctctgcatccagc 118
|||||| ||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 90 gaatcggtcgataaacctctgcatccag 117
|||||| |||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 90 gaatcggtcgataaacctctgcatccag 117
|||||| |||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158
