miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>50217_osa-miRf11002-akr:pmrd
          Length = 111

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 37 ctagtccagattcgtagtac 56
          ||||||||||||||||||||
Sbjct: 72 ctagtccagattcgtagtac 53

>50216_osa-miRf11001-akr:pmrd
          Length = 113

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 37 ctagtccagattcgtagtac 56
          ||||||||||||||||||||
Sbjct: 41 ctagtccagattcgtagtac 60

>50215_osa-miRf11000-akr:pmrd
          Length = 113

 Score = 40.1 bits (20), Expect = 2e-04
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 37 ctagtccagattcgtagtac 56
          ||||||||||||||||||||
Sbjct: 73 ctagtccagattcgtagtac 54

>49688_osa-miRf10473-akr:pmrd
          Length = 76

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 40 gtccagattcgtagtacta 58
          |||||||||||||||||||
Sbjct: 35 gtccagattcgtagtacta 53

>49615_osa-miRf10400-akr:pmrd
          Length = 85

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 40/47 (85%)
 Strand = Plus / Minus

                                                         
Query: 12 tagtattatgaatttggacatgggactagtccagattcgtagtacta 58
          ||||| |||||||||||||| |   | |||||||||| |||||||||
Sbjct: 66 tagtactatgaatttggacaggctcccagtccagatttgtagtacta 20

>49466_osa-miRf10251-akr:pmrd
          Length = 83

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 40 gtccagattcgtagtacta 58
          |||||||||||||||||||
Sbjct: 48 gtccagattcgtagtacta 30

>49153_osa-miR1862b:pmrd
          Length = 199

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 41  tccagattcgtagtactat 59
           |||||||||||||||||||
Sbjct: 106 tccagattcgtagtactat 88