miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 69.9 bits (35), Expect = 6e-12
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 10 cactggaggcatcggttcatcgatctgtttatgagattttgttgtgagtaaacacagttc 69
||||||||||| |||||||||||||| || || || |||| ||||| || ||||| |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctgggaatttggtgtgaaaaatcacagaac 60
Query: 70 atgaatcggtcgataaacctttgcatccagc 100
|||||||| ||||||||||| ||||||||||
Sbjct: 61 atgaatcgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 69 catgaatcggtcgataaacctttgcatccagc 100
||||||||||||||||||||| ||||||||||
Sbjct: 59 catgaatcggtcgataaacctctgcatccagc 90
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 72 gaatcggtcgataaacctttgcatccagc 100
|||||||||||||||||| ||||||||||
Sbjct: 60 gaatcggtcgataaacctctgcatccagc 88
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 72 gaatcggtcgataaacctttgcatccagc 100
|||||||||||||||||| ||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 69 catgaatcggtcgataaacctttgcatccagc 100
||||||||| ||||||||||| ||||||||||
Sbjct: 65 catgaatcgatcgataaacctctgcatccagc 96
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 cactggaggcatcggttcatcgatct 35
||||||||||| ||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatct 26
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 cactggaggcatcggttcatcgatct 35
||||||||||| ||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatct 26
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 cactggaggcatcggttcatcgatct 35
||||||||||| ||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatct 26
