miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2
OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1
Length = 184
Score = 58.9 bits (141), Expect = 9e-09
Identities = 29/49 (59%), Positives = 36/49 (73%), Gaps = 3/49 (6%)
Frame = +2
Query: 5 MVTVRCGHCANLLSVNIGGSLQSTTIPP-HQD--PQKQHLSSEDSNKNC 142
+VTVRCGHC NLLS+NIG SL T+ PP HQD P +QH +S + K+C
Sbjct: 34 LVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTTSLVTRKDC 82
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp.
japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 45.1 bits (105), Expect = 1e-04
Identities = 22/38 (57%), Positives = 25/38 (65%)
Frame = +2
Query: 2 NMVTVRCGHCANLLSVNIGGSLQSTTIPPHQDPQKQHL 115
N+VTVRCGHC NLLSVN+ G + S P QD HL
Sbjct: 34 NIVTVRCGHCTNLLSVNLRGLMHSA--PALQDHHHHHL 69
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp.
japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 44.3 bits (103), Expect = 2e-04
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 2 NMVTVRCGHCANLLSVNIGGSLQSTTIPPH-QDPQKQHLSSEDSN 133
N+VTVRCGHC +LLSVN+ G +Q+ H QD K H S N
Sbjct: 35 NIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFREN 79
