miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00714;MIR535;CAAP02011100.1/4619-4518 29760:Vitis vinifera
Length = 102
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 35 aattggttgacgacgagagagagcacacttgttagcattcatg 77
||||| ||||| | |||||||||||||||||||||||||||||
Sbjct: 4 aattgcttgacaaagagagagagcacacttgttagcattcatg 46
>RF00714;MIR535;AASG02007689.1/8432-8332 3988:Ricinus communis
(castor bean)
Length = 101
Score = 52.0 bits (26), Expect = 2e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 37 ttggttgacgacgagagagagcacacttgttagcattcatgc 78
|||||||||||||||||||||||| |||| |||| ||||||
Sbjct: 6 ttggttgacgacgagagagagcacgtttgtcagcagtcatgc 47
>RF00714;MIR535;AASG02028037.1/959-864 3988:Ricinus communis
(castor bean)
Length = 96
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 40 gttgacgacgagagagagcacacttgttagcattcatg 77
|||||| |||||||||||||| ||||||||| ||||||
Sbjct: 9 gttgacaacgagagagagcacgcttgttagccttcatg 46
>RF00714;MIR535;CAAP02013010.1/2187-2087 29760:Vitis vinifera
Length = 101
Score = 50.1 bits (25), Expect = 9e-06
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 33 ataattggttgacgacgagagagagcacacttgttagcattcatg 77
||||||| ||||| ||||||||||||| ||||| ||||||||||
Sbjct: 2 ataattgcttgacaacgagagagagcatgcttgtcagcattcatg 46
