miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>53686_ptc-miRf11864-akr:pmrd
          Length = 69

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 36 ttcggttcgattcggttcggtt 57
          ||||||||||||||||||||||
Sbjct: 46 ttcggttcgattcggttcggtt 67

>53024_ptc-miRf11202-akr:pmrd
          Length = 78

 Score = 42.1 bits (21), Expect = 4e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 8  gaaaccgaatcgaaccgaacc 28
          |||||||||||||||||||||
Sbjct: 52 gaaaccgaatcgaaccgaacc 72

>54261_ptc-miRf12439-akr:pmrd
          Length = 90

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 9  aaaccgaatcgaaccgaaccggt 31
          |||||||| ||||||||||||||
Sbjct: 33 aaaccgaaccgaaccgaaccggt 11

>54220_ptc-miRf12398-akr:pmrd
          Length = 69

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 36 ttcggttcgattcggttcggttt 58
          ||||||||| |||||||||||||
Sbjct: 24 ttcggttcggttcggttcggttt 2

>54026_ptc-miRf12204-akr:pmrd
          Length = 90

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 9  aaaccgaatcgaaccgaaccggt 31
          |||||||| ||||||||||||||
Sbjct: 33 aaaccgaaccgaaccgaaccggt 11

>53912_ptc-miRf12090-akr:pmrd
          Length = 90

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 9  aaaccgaatcgaaccgaaccggt 31
          |||||||| ||||||||||||||
Sbjct: 33 aaaccgaaccgaaccgaaccggt 11

>53910_ptc-miRf12088-akr:pmrd
          Length = 90

 Score = 38.2 bits (19), Expect = 7e-04
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 9  aaaccgaatcgaaccgaaccggt 31
          |||||||| ||||||||||||||
Sbjct: 33 aaaccgaaccgaaccgaaccggt 11