miRNEST 2.0, an integrative microRNA resource :: BLAST
>41424_ptc-MIR394b:mirbase
Length = 147
Score = 155 bits (78), Expect = 1e-38
Identities = 133/151 (88%), Gaps = 4/151 (2%)
Strand = Plus / Plus
Query: 6 tcatgtgggtttaacaaagggtttcttacagagtttattggcattctgtccacctcccat 65
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 tcatgtggatttagcaaagggtttcttacagagtttattggcattctgtccacctcctat 60
Query: 66 ctgtagaaatctgtctctctcacgagctcacatggaggtgggcatactgccaactgagct 125
|| ||||||| | | |||| ||| ||||||||||||||||||||||| |||||
Sbjct: 61 ctttagaaattagaatatctc----tttcatatggaggtgggcatactgccaaccgagct 116
Query: 126 ctgttggtctctctttgtaaaactctcgtga 156
||||||||||||||||||||||| |||||||
Sbjct: 117 ctgttggtctctctttgtaaaaccctcgtga 147
>41423_ptc-MIR394b:mirbase
Length = 147
Score = 155 bits (78), Expect = 1e-38
Identities = 133/151 (88%), Gaps = 4/151 (2%)
Strand = Plus / Plus
Query: 6 tcatgtgggtttaacaaagggtttcttacagagtttattggcattctgtccacctcccat 65
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1 tcatgtggatttagcaaagggtttcttacagagtttattggcattctgtccacctcctat 60
Query: 66 ctgtagaaatctgtctctctcacgagctcacatggaggtgggcatactgccaactgagct 125
|| ||||||| | | |||| ||| ||||||||||||||||||||||| |||||
Sbjct: 61 ctttagaaattagaatatctc----tttcatatggaggtgggcatactgccaaccgagct 116
Query: 126 ctgttggtctctctttgtaaaactctcgtga 156
||||||||||||||||||||||| |||||||
Sbjct: 117 ctgttggtctctctttgtaaaaccctcgtga 147
>41422_ptc-MIR394a:mirbase
Length = 147
Score = 109 bits (55), Expect = 6e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 98 tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaactctcgtga 156
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 89 tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaaccctcgtga 147
>41421_ptc-MIR394a:mirbase
Length = 147
Score = 109 bits (55), Expect = 6e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 98 tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaactctcgtga 156
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 89 tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaaccctcgtga 147
>41055_ghr-MIR394a:mirbase
Length = 167
Score = 99.6 bits (50), Expect = 6e-22
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 2 gctttcatgtgggtttaacaaagggtttcttacagagtttattggcattctgtccacctc 61
||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2 gctttcatgggggtttagcaaagggcttcttacagagtttattggcattctgtccacctc 61
Query: 62 cc 63
||
Sbjct: 62 cc 63
Score = 79.8 bits (40), Expect = 6e-16
Identities = 49/52 (94%)
Strand = Plus / Plus
Query: 96 catggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaa 147
|||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 103 catggaggtgggcatactgccaactgtgctctgttggcttctctttgtaaaa 154
>41134_tcc-MIR394a:mirbase
Length = 120
Score = 79.8 bits (40), Expect = 6e-16
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 23 agggtttcttacagagtttattggcattctgtccacctcccatc 66
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agggcttcttacagagtttattggcattctgtccacctcccatc 44
Score = 65.9 bits (33), Expect = 9e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 96 catggaggtgggcatactgccaactgagctctgttgg 132
|||||||||||||||||||||||||| ||||||||||
Sbjct: 76 catggaggtgggcatactgccaactgggctctgttgg 112
>41239_csi-MIR394:mirbase
Length = 147
Score = 73.8 bits (37), Expect = 4e-14
Identities = 37/37 (100%)
Strand = Plus / Plus
Query: 96 catggaggtgggcatactgccaactgagctctgttgg 132
|||||||||||||||||||||||||||||||||||||
Sbjct: 103 catggaggtgggcatactgccaactgagctctgttgg 139
Score = 69.9 bits (35), Expect = 6e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 28 ttcttacagagtttattggcattctgtccacctcc 62
|||||||||||||||||||||||||||||||||||
Sbjct: 2 ttcttacagagtttattggcattctgtccacctcc 36
>40471_gma-MIR394a:mirbase
Length = 157
Score = 73.8 bits (37), Expect = 4e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 6 tcatgtgggtttaacaaagggtttcttacagagtttattggcattctgtccacctcc 62
||||| ||||||| ||||| ||| || ||||||||||||||||||||||||||||||
Sbjct: 2 tcatgagggtttagcaaagtgttgctaacagagtttattggcattctgtccacctcc 58
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 97 atggaggtgggcatactgccaactgagctctgttgg 132
|||||||||||||||||| |||||||||||||||||
Sbjct: 97 atggaggtgggcatactgtcaactgagctctgttgg 132
>41644_vvi-MIR394b:mirbase
Length = 93
Score = 69.9 bits (35), Expect = 6e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 33 acagagtttattggcattctgtccacctcccatct 67
|||||||||||||||||||||||||||||||||||
Sbjct: 1 acagagtttattggcattctgtccacctcccatct 35
Score = 50.1 bits (25), Expect = 5e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 98 tggaggtgggcatactgccaactgagctctgtt 130
|||||||||||||||||||||| |||||||||
Sbjct: 61 tggaggtgggcatactgccaaccaagctctgtt 93
>39867_aly-MIR394a:mirbase
Length = 220
Score = 61.9 bits (31), Expect = 1e-10
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 4 tttcatgtgggtttaacaaagggtttcttacagagtttattggcattctgtccacctcc 62
||||||| |||||| |||||| |||||||||||| | ||||||||||||||||||||
Sbjct: 29 tttcatgagggtttgacaaagagtttcttacagacatctttggcattctgtccacctcc 87
>40472_gma-MIR394b:mirbase
Length = 104
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 33 acagagtttattggcattctgtccacctcc 62
||||||||||||||||||||||||||||||
Sbjct: 3 acagagtttattggcattctgtccacctcc 32
Score = 52.0 bits (26), Expect = 1e-07
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 98 tggaggtgggcatactgccaactgagctctgttg 131
||||||||||||||||| |||||||| |||||||
Sbjct: 71 tggaggtgggcatactgtcaactgagttctgttg 104
>41776_bdi-MIR394:mirbase
Length = 200
Score = 46.1 bits (23), Expect = 8e-06
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 98 tggaggtgggcatactgccaactgagctctgttggtctctctttgtaaaac 148
||||||||||||||||||||| ||||| ||| || || |||||||||||
Sbjct: 125 tggaggtgggcatactgccaatggagctgtgtaggcttccctttgtaaaac 175
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 53 ttggcattctgtccacctcc 72
>39868_aly-MIR394b:mirbase
Length = 160
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 29 tcttacagagtttattggcattctgtccacctcc 62
|||||||||| | ||||||||||||||||||||
Sbjct: 27 tcttacagagatctttggcattctgtccacctcc 60
>42790_zma-MIR394b:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctccc 63
|||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctccc 41
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 tggaggtgggcatactgccaa 118
|||||||||||||||||||||
Sbjct: 83 tggaggtgggcatactgccaa 103
>42789_zma-MIR394a:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 tggaggtgggcatactgccaa 118
|||||||||||||||||||||
Sbjct: 87 tggaggtgggcatactgccaa 107
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>42569_sbi-MIR394b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 tggaggtgggcatactgccaa 118
|||||||||||||||||||||
Sbjct: 53 tggaggtgggcatactgccaa 73
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 2 ttggcattctgtccacctcc 21
>42000_osa-MIR394:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 98 tggaggtgggcatactgccaa 118
|||||||||||||||||||||
Sbjct: 76 tggaggtgggcatactgccaa 96
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
>40078_ath-MIR394b:mirbase
Length = 121
Score = 42.1 bits (21), Expect = 1e-04
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 30 cttacagagtttattggcattctgtccacctcc 62
||||||||| | ||||||||||||||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctcc 33
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 99 ggaggtgggcatactgccaa 118
||||||||||||||||||||
Sbjct: 88 ggaggtgggcatactgccaa 107
>42568_sbi-MIR394a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>41645_vvi-MIR394c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>41643_vvi-MIR394a:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 11 ttggcattctgtccacctcc 30
>41135_tcc-MIR394b:mirbase
Length = 125
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 21 ttggcattctgtccacctcc 40
>41056_ghr-MIR394b:mirbase
Length = 165
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 35 ttggcattctgtccacctcc 54
>40402_ahy-MIR394:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 22 ttggcattctgtccacctcc 41
>40077_ath-MIR394a:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 ttggcattctgtccacctcc 62
||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcc 33
