miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;AARH01002882.1/31556-31654 3694:Populus trichocarpa
Length = 99
Score = 83.8 bits (42), Expect = 7e-16
Identities = 88/103 (85%), Gaps = 4/103 (3%)
Strand = Plus / Plus
Query: 30 cttacagagtttattggcattctgtccacctcccatctgtagaaatctgtctctctcacg 89
||||||||||||||||||||||||||||||||| |||| ||||||| | | ||||
Sbjct: 1 cttacagagtttattggcattctgtccacctcctatctttagaaattagaatatctc--- 57
Query: 90 agctcacatggaggtgggcatactgccaactgagctctgttgg 132
||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 58 -tttcatatggaggtgggcatactgccaaccgagctctgttgg 99
>RF00688;MIR394;AASG02000377.1/56114-56246 3988:Ricinus communis
(castor bean)
Length = 133
Score = 71.9 bits (36), Expect = 3e-12
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 97 atggaggtgggcatactgccaactgagctctgttgg 132
||||||||||||||||||||||||||||||||||||
Sbjct: 98 atggaggtgggcatactgccaactgagctctgttgg 133
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 30 cttacagagtttattggcattctgtccacctcc 62
||||||||| |||||||||||||||||||||||
Sbjct: 1 cttacagagcttattggcattctgtccacctcc 33
>RF00688;MIR394;AARH01001039.1/148774-148676 3694:Populus
trichocarpa
Length = 99
Score = 69.9 bits (35), Expect = 1e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 98 tggaggtgggcatactgccaactgagctctgttgg 132
|||||||||||||||||||||||||||||||||||
Sbjct: 65 tggaggtgggcatactgccaactgagctctgttgg 99
Score = 65.9 bits (33), Expect = 2e-10
Identities = 43/45 (95%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 30 cttacagagtttattggcattctgtccacctcccatctgtagaaa 74
|||||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 1 cttacagagttttttggcattctgtccacct-ccatctgtagaaa 44
>RF00688;MIR394;AM428484.2/52366-52463 29760:Vitis vinifera
Length = 98
Score = 69.9 bits (35), Expect = 1e-11
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 33 acagagtttattggcattctgtccacctcccatct 67
|||||||||||||||||||||||||||||||||||
Sbjct: 4 acagagtttattggcattctgtccacctcccatct 38
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 98 tggaggtgggcatactgccaactgagctctgttgg 132
|||||||||||||||||||||| |||||||||||
Sbjct: 64 tggaggtgggcatactgccaaccaagctctgttgg 98
>RF00688;MIR394;DQ908352.1/346-226 3635:Gossypium hirsutum (upland
cotton)
Length = 121
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 30 cttacagagtttattggcattctgtccacctcc 62
|||||||||||||||||||||||||||||||||
Sbjct: 1 cttacagagtttattggcattctgtccacctcc 33
Score = 65.9 bits (33), Expect = 2e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 96 catggaggtgggcatactgccaactgagctctgttgg 132
|||||||||||||| ||||||||||||||||||||||
Sbjct: 85 catggaggtgggcaaactgccaactgagctctgttgg 121
>RF00688;MIR394;ABIM01007450.1/10865-10745 3649:Carica papaya
(papaya)
Length = 121
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 30 cttacagagtttattggcattctgtccacctcc 62
|||||||||||||||||||||||||||||||||
Sbjct: 1 cttacagagtttattggcattctgtccacctcc 33
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 99 ggaggtgggcatactgccaactgagctctgtt 130
|||||||||||||||| |||| ||||||||||
Sbjct: 88 ggaggtgggcatactgtcaacagagctctgtt 119
>RF00688;MIR394;AC189318.1/31773-31892 51351:Brassica rapa subsp.
pekinensis
Length = 120
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 30 cttacagagtttattggcattctgtccacctcc 62
||||||||||| ||||||||||||||||||||
Sbjct: 1 cttacagagttctttggcattctgtccacctcc 33
>RF00688;MIR394;AC189295.2/85926-86037 51351:Brassica rapa subsp.
pekinensis
Length = 112
Score = 48.1 bits (24), Expect = 4e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 99 ggaggtgggcatactgccaactgagctctgtt 130
||||||||||||||||||||| ||| ||||||
Sbjct: 79 ggaggtgggcatactgccaacagagatctgtt 110
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 30 cttacagagtttattggcattctgtccacctccc 63
||||||||| | |||||||||||||||||||||
Sbjct: 1 cttacagagatctttggcattctgtccacctccc 34
>RF00688;MIR394;BABK01003371.1/1268-1359 34305:Lotus japonicus
Length = 92
Score = 44.1 bits (22), Expect = 6e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Plus
Query: 30 cttacagagtt-tattggcattctgtccacctcc 62
||||||||||| | ||||||||||||||||||||
Sbjct: 1 cttacagagttattttggcattctgtccacctcc 34
Score = 44.1 bits (22), Expect = 6e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 99 ggaggtgggcatactgccaactgagctctgttgg 132
|||||||| |||||||||||| |||||||||||
Sbjct: 59 ggaggtggccatactgccaacacagctctgttgg 92
