miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AM485267.2/15969-16057 29760:Vitis vinifera
          Length = 89

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 15 tttgaagggaatgttggctggctctaggcattcaca 50
          ||||| |||||||||||||||||| |||||||||||
Sbjct: 1  tttgaggggaatgttggctggctcgaggcattcaca 36




>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
          Length = 90

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                         
Query: 84  aagctttggaccaggcttcattcccctcaa 113
           |||||| |||||||||||||||||||||||
Sbjct: 60  aagcttcggaccaggcttcattcccctcaa 89




>RF00075;mir-166;ABEU01002053.1/8010-8104 145481:Physcomitrella
           patens subsp. patens
          Length = 95

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 84  aagctttggaccaggcttcattcccctca 112
           |||||| ||||||||||||||||||||||
Sbjct: 65  aagcttcggaccaggcttcattcccctca 93




>RF00075;mir-166;ABEU01002839.1/114707-114612 145481:Physcomitrella
           patens subsp. patens
          Length = 96

 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 84  aagctttggaccaggcttcattcccctca 112
           |||||| ||||||||||||||||||||||
Sbjct: 66  aagcttcggaccaggcttcattcccctca 94




>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
           (papaya)
          Length = 100

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 86  gctttggaccaggcttcattcccctcaa 113
           |||| |||||||||||||||||||||||
Sbjct: 72  gcttcggaccaggcttcattcccctcaa 99




>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
           pekinensis
          Length = 122

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 91  ggaccaggcttcattcccctcaat 114
           ||||||||||||||||||||||||
Sbjct: 99  ggaccaggcttcattcccctcaat 122




>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
           (thale cress)
          Length = 145

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 91  ggaccaggcttcattcccctcaat 114
           ||||||||||||||||||||||||
Sbjct: 122 ggaccaggcttcattcccctcaat 145




>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus trichocarpa
          Length = 88

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 91  ggaccaggcttcattcccctcaat 114
           ||||||||||||||||||||||||
Sbjct: 65  ggaccaggcttcattcccctcaat 88




>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
          Length = 96

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 86  gctttggaccaggcttcattcccctcaa 113
           |||| |||||||||||||||||||||||
Sbjct: 68  gcttcggaccaggcttcattcccctcaa 95




>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
          Length = 94

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 91  ggaccaggcttcattcccctcaat 114
           ||||||||||||||||||||||||
Sbjct: 71  ggaccaggcttcattcccctcaat 94




>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
           (barrel medic)
          Length = 106

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 86  gctttggaccaggcttcattcccctcaa 113
           |||| |||||||||||||||||||||||
Sbjct: 78  gcttcggaccaggcttcattcccctcaa 105




>RF00075;mir-166;CU302248.6/62232-62044 3880:Medicago truncatula
           (barrel medic)
          Length = 189

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 91  ggaccaggcttcattcccctcaat 114
           ||||||||||||||||||||||||
Sbjct: 166 ggaccaggcttcattcccctcaat 189




>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
          Length = 123

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 86  gctttggaccaggcttcattcccctcaa 113
           |||| |||||||||||||||||||||||
Sbjct: 95  gcttcggaccaggcttcattcccctcaa 122




>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
          Length = 150

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 91  ggaccaggcttcattcccctcaat 114
           ||||||||||||||||||||||||
Sbjct: 127 ggaccaggcttcattcccctcaat 150




>RF00075;mir-166;ABEU01001509.1/36651-36730 145481:Physcomitrella
           patens subsp. patens
          Length = 80

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 84  aagctttggaccaggcttcattcccctc 111
           |||||| |||||||||||||||||||||
Sbjct: 50  aagcttcggaccaggcttcattcccctc 77




>RF00075;mir-166;ABEU01001509.1/36829-36913 145481:Physcomitrella
           patens subsp. patens
          Length = 85

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 84  aagctttggaccaggcttcattcccctc 111
           |||||| |||||||||||||||||||||
Sbjct: 55  aagcttcggaccaggcttcattcccctc 82




>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
           (papaya)
          Length = 125

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ggaccaggcttcattcccctcaa 113
           |||||||||||||||||||||||
Sbjct: 102 ggaccaggcttcattcccctcaa 124




>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
           pekinensis
          Length = 109

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ggaccaggcttcattcccctcaa 113
           |||||||||||||||||||||||
Sbjct: 86  ggaccaggcttcattcccctcaa 108




>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana (thale
           cress)
          Length = 98

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ggaccaggcttcattcccctcaa 113
           |||||||||||||||||||||||
Sbjct: 75  ggaccaggcttcattcccctcaa 97




>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
           cress)
          Length = 101

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ggaccaggcttcattcccctcaa 113
           |||||||||||||||||||||||
Sbjct: 78  ggaccaggcttcattcccctcaa 100




>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana (thale
           cress)
          Length = 100

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ggaccaggcttcattcccctcaa 113
           |||||||||||||||||||||||
Sbjct: 77  ggaccaggcttcattcccctcaa 99




>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
          Length = 90

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ggaccaggcttcattcccctcaa 113
           |||||||||||||||||||||||
Sbjct: 67  ggaccaggcttcattcccctcaa 89




>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
          Length = 157

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ggaccaggcttcattcccctcaa 113
           |||||||||||||||||||||||
Sbjct: 134 ggaccaggcttcattcccctcaa 156




>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
          Length = 119

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ggaccaggcttcattcccctcaa 113
           |||||||||||||||||||||||
Sbjct: 96  ggaccaggcttcattcccctcaa 118




>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
          Length = 97

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ggaccaggcttcattcccctcaa 113
           |||||||||||||||||||||||
Sbjct: 74  ggaccaggcttcattcccctcaa 96




>RF00075;mir-166;ABXC01000331.1/255164-255261 4558:Sorghum bicolor
           (sorghum)
          Length = 98

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ggaccaggcttcattcccctcaa 113
           |||||||||||||||||||||||
Sbjct: 75  ggaccaggcttcattcccctcaa 97




>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
           (sorghum)
          Length = 97

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ggaccaggcttcattcccctcaa 113
           |||||||||||||||||||||||
Sbjct: 74  ggaccaggcttcattcccctcaa 96




>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
           Japonica Group
          Length = 87

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ggaccaggcttcattcccctcaa 113
           |||||||||||||||||||||||
Sbjct: 64  ggaccaggcttcattcccctcaa 86




>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
           Indica Group
          Length = 87

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ggaccaggcttcattcccctcaa 113
           |||||||||||||||||||||||
Sbjct: 64  ggaccaggcttcattcccctcaa 86




>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
           Japonica Group
          Length = 103

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ggaccaggcttcattcccctcaa 113
           |||||||||||||||||||||||
Sbjct: 80  ggaccaggcttcattcccctcaa 102




>RF00075;mir-166;ABEU01002487.1/1609-1703 145481:Physcomitrella
           patens subsp. patens
          Length = 95

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 86  gctttggaccaggcttcattcccctca 112
           |||| ||||||||||||||||||||||
Sbjct: 67  gcttcggaccaggcttcattcccctca 93




>RF00075;mir-166;ABIM01001512.1/1249-1387 3649:Carica papaya
           (papaya)
          Length = 139

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 89  ttggaccaggcttcattcccct 110
           ||||||||||||||||||||||
Sbjct: 114 ttggaccaggcttcattcccct 135




>RF00075;mir-166;AARH01009662.1/134102-134198 3694:Populus
           trichocarpa
          Length = 97

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  ggaccaggcttcattcccctca 112
           ||||||||||||||||||||||
Sbjct: 74  ggaccaggcttcattcccctca 95




>RF00075;mir-166;BABK01039514.1/607-703 34305:Lotus japonicus
          Length = 97

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  ggaccaggcttcattcccctca 112
           ||||||||||||||||||||||
Sbjct: 74  ggaccaggcttcattcccctca 95




>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
          Length = 114

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  ggaccaggcttcattcccctca 112
           ||||||||||||||||||||||
Sbjct: 91  ggaccaggcttcattcccctca 112




>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
          Length = 122

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  ggaccaggcttcattcccctca 112
           ||||||||||||||||||||||
Sbjct: 101 ggaccaggcttcattcccctca 122




>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
           (sorghum)
          Length = 118

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  ggaccaggcttcattcccctca 112
           ||||||||||||||||||||||
Sbjct: 95  ggaccaggcttcattcccctca 116




>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
           (sorghum)
          Length = 114

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  ggaccaggcttcattcccctca 112
           ||||||||||||||||||||||
Sbjct: 91  ggaccaggcttcattcccctca 112




>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
           Indica Group
          Length = 121

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  ggaccaggcttcattcccctca 112
           ||||||||||||||||||||||
Sbjct: 98  ggaccaggcttcattcccctca 119




>RF00075;mir-166;ABEU01003209.1/178750-178656 145481:Physcomitrella
           patens subsp. patens
          Length = 95

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  ggaccaggcttcattcccctca 112
           ||||||||||||||||||||||
Sbjct: 72  ggaccaggcttcattcccctca 93




>RF00075;mir-166;ABEU01001509.1/37358-37431 145481:Physcomitrella
           patens subsp. patens
          Length = 74

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  ggaccaggcttcattcccctca 112
           ||||||||||||||||||||||
Sbjct: 51  ggaccaggcttcattcccctca 72