miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AM485267.2/15969-16057 29760:Vitis vinifera
Length = 89
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 27 tttgaagggaatgttggctggctctaggcattcaca 62
||||| |||||||||||||||||| |||||||||||
Sbjct: 1 tttgaggggaatgttggctggctcgaggcattcaca 36
>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
Length = 90
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 96 aagctttggaccaggcttcattcccctcaa 125
|||||| |||||||||||||||||||||||
Sbjct: 60 aagcttcggaccaggcttcattcccctcaa 89
>RF00075;mir-166;ABEU01002053.1/8010-8104 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 96 aagctttggaccaggcttcattcccctca 124
|||||| ||||||||||||||||||||||
Sbjct: 65 aagcttcggaccaggcttcattcccctca 93
>RF00075;mir-166;ABEU01002839.1/114707-114612 145481:Physcomitrella
patens subsp. patens
Length = 96
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 96 aagctttggaccaggcttcattcccctca 124
|||||| ||||||||||||||||||||||
Sbjct: 66 aagcttcggaccaggcttcattcccctca 94
>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
(papaya)
Length = 100
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 98 gctttggaccaggcttcattcccctcaa 125
|||| |||||||||||||||||||||||
Sbjct: 72 gcttcggaccaggcttcattcccctcaa 99
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaat 126
||||||||||||||||||||||||
Sbjct: 99 ggaccaggcttcattcccctcaat 122
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaat 126
||||||||||||||||||||||||
Sbjct: 122 ggaccaggcttcattcccctcaat 145
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus trichocarpa
Length = 88
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaat 126
||||||||||||||||||||||||
Sbjct: 65 ggaccaggcttcattcccctcaat 88
>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
Length = 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 98 gctttggaccaggcttcattcccctcaa 125
|||| |||||||||||||||||||||||
Sbjct: 68 gcttcggaccaggcttcattcccctcaa 95
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaat 126
||||||||||||||||||||||||
Sbjct: 71 ggaccaggcttcattcccctcaat 94
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 98 gctttggaccaggcttcattcccctcaa 125
|||| |||||||||||||||||||||||
Sbjct: 78 gcttcggaccaggcttcattcccctcaa 105
>RF00075;mir-166;CU302248.6/62232-62044 3880:Medicago truncatula
(barrel medic)
Length = 189
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaat 126
||||||||||||||||||||||||
Sbjct: 166 ggaccaggcttcattcccctcaat 189
>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
Length = 123
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 98 gctttggaccaggcttcattcccctcaa 125
|||| |||||||||||||||||||||||
Sbjct: 95 gcttcggaccaggcttcattcccctcaa 122
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaat 126
||||||||||||||||||||||||
Sbjct: 127 ggaccaggcttcattcccctcaat 150
>RF00075;mir-166;ABEU01001509.1/36651-36730 145481:Physcomitrella
patens subsp. patens
Length = 80
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 96 aagctttggaccaggcttcattcccctc 123
|||||| |||||||||||||||||||||
Sbjct: 50 aagcttcggaccaggcttcattcccctc 77
>RF00075;mir-166;ABEU01001509.1/36829-36913 145481:Physcomitrella
patens subsp. patens
Length = 85
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 96 aagctttggaccaggcttcattcccctc 123
|||||| |||||||||||||||||||||
Sbjct: 55 aagcttcggaccaggcttcattcccctc 82
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaa 125
|||||||||||||||||||||||
Sbjct: 102 ggaccaggcttcattcccctcaa 124
>RF00075;mir-166;AC189591.2/50508-50400 51351:Brassica rapa subsp.
pekinensis
Length = 109
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaa 125
|||||||||||||||||||||||
Sbjct: 86 ggaccaggcttcattcccctcaa 108
>RF00075;mir-166;EU548911.1/166-263 3702:Arabidopsis thaliana (thale
cress)
Length = 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaa 125
|||||||||||||||||||||||
Sbjct: 75 ggaccaggcttcattcccctcaa 97
>RF00075;mir-166;EU548905.1/187-287 3702:Arabidopsis thaliana (thale
cress)
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaa 125
|||||||||||||||||||||||
Sbjct: 78 ggaccaggcttcattcccctcaa 100
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaa 125
|||||||||||||||||||||||
Sbjct: 77 ggaccaggcttcattcccctcaa 99
>RF00075;mir-166;CAAP02000553.1/130979-130890 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaa 125
|||||||||||||||||||||||
Sbjct: 67 ggaccaggcttcattcccctcaa 89
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaa 125
|||||||||||||||||||||||
Sbjct: 134 ggaccaggcttcattcccctcaa 156
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaa 125
|||||||||||||||||||||||
Sbjct: 96 ggaccaggcttcattcccctcaa 118
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaa 125
|||||||||||||||||||||||
Sbjct: 74 ggaccaggcttcattcccctcaa 96
>RF00075;mir-166;ABXC01000331.1/255164-255261 4558:Sorghum bicolor
(sorghum)
Length = 98
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaa 125
|||||||||||||||||||||||
Sbjct: 75 ggaccaggcttcattcccctcaa 97
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaa 125
|||||||||||||||||||||||
Sbjct: 74 ggaccaggcttcattcccctcaa 96
>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
Japonica Group
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaa 125
|||||||||||||||||||||||
Sbjct: 64 ggaccaggcttcattcccctcaa 86
>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
Indica Group
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaa 125
|||||||||||||||||||||||
Sbjct: 64 ggaccaggcttcattcccctcaa 86
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctcaa 125
|||||||||||||||||||||||
Sbjct: 80 ggaccaggcttcattcccctcaa 102
>RF00075;mir-166;ABEU01002487.1/1609-1703 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 98 gctttggaccaggcttcattcccctca 124
|||| ||||||||||||||||||||||
Sbjct: 67 gcttcggaccaggcttcattcccctca 93
>RF00075;mir-166;ABIM01001512.1/1249-1387 3649:Carica papaya
(papaya)
Length = 139
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 ttggaccaggcttcattcccct 122
||||||||||||||||||||||
Sbjct: 114 ttggaccaggcttcattcccct 135
>RF00075;mir-166;AARH01009662.1/134102-134198 3694:Populus
trichocarpa
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctca 124
||||||||||||||||||||||
Sbjct: 74 ggaccaggcttcattcccctca 95
>RF00075;mir-166;BABK01039514.1/607-703 34305:Lotus japonicus
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctca 124
||||||||||||||||||||||
Sbjct: 74 ggaccaggcttcattcccctca 95
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctca 124
||||||||||||||||||||||
Sbjct: 91 ggaccaggcttcattcccctca 112
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctca 124
||||||||||||||||||||||
Sbjct: 101 ggaccaggcttcattcccctca 122
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctca 124
||||||||||||||||||||||
Sbjct: 95 ggaccaggcttcattcccctca 116
>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
(sorghum)
Length = 114
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctca 124
||||||||||||||||||||||
Sbjct: 91 ggaccaggcttcattcccctca 112
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctca 124
||||||||||||||||||||||
Sbjct: 98 ggaccaggcttcattcccctca 119
>RF00075;mir-166;ABEU01003209.1/178750-178656 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctca 124
||||||||||||||||||||||
Sbjct: 72 ggaccaggcttcattcccctca 93
>RF00075;mir-166;ABEU01001509.1/37358-37431 145481:Physcomitrella
patens subsp. patens
Length = 74
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 103 ggaccaggcttcattcccctca 124
||||||||||||||||||||||
Sbjct: 51 ggaccaggcttcattcccctca 72
