miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AASG02001979.1/21180-21275 3988:Ricinus communis
           (castor bean)
          Length = 96

 Score = 63.9 bits (32), Expect = 5e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 91  ctgccaaaggagaattgccctgttattcaact 122
           ||||||||||||||||||||||||||||||||
Sbjct: 65  ctgccaaaggagaattgccctgttattcaact 96



 Score = 54.0 bits (27), Expect = 5e-07
 Identities = 30/31 (96%)
 Strand = Plus / Plus

                                         
Query: 20 agaatatcagtgcgattctcctttggcagga 50
          ||||||||||||| |||||||||||||||||
Sbjct: 4  agaatatcagtgcaattctcctttggcagga 34




>RF00445;mir-399;AM467681.2/12374-12276 29760:Vitis vinifera
          Length = 99

 Score = 60.0 bits (30), Expect = 8e-09
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                         
Query: 91  ctgccaaaggagaattgccctgttattcaa 120
           ||||||||||||||||||||||||||||||
Sbjct: 68  ctgccaaaggagaattgccctgttattcaa 97




>RF00445;mir-399;AARH01002114.1/15624-15718 3694:Populus trichocarpa
          Length = 95

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 91  ctgccaaaggagaattgccctgttattcaact 122
           ||||||||||||||||||||||  ||||||||
Sbjct: 64  ctgccaaaggagaattgccctgccattcaact 95




>RF00445;mir-399;ABXC01006771.1/37202-37314 4558:Sorghum bicolor
           (sorghum)
          Length = 113

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  ctgccaaaggagaattgccctg 112
           ||||||||||||||||||||||
Sbjct: 82  ctgccaaaggagaattgccctg 103




>RF00445;mir-399;AAAA02019779.1/19949-19837 39946:Oryza sativa
           Indica Group
          Length = 113

 Score = 44.1 bits (22), Expect = 5e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  ctgccaaaggagaattgccctg 112
           ||||||||||||||||||||||
Sbjct: 82  ctgccaaaggagaattgccctg 103