miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 135 bits (68), Expect = 3e-31
Identities = 95/104 (91%)
Strand = Plus / Plus
Query: 59 aagactgggaacaggcagagcatggatggagctattaatggaaatatctgttttggctcc 118
||||| |||||||||||||||||||||||||||| ||| ||| || |||||||||||
Sbjct: 16 aagacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctct 75
Query: 119 acccatgcactgcctcttccctggcttgtggctcctccttttct 162
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 76 acccatgcactgcctcttccctggcttgtggctcttccttttct 119
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 103 bits (52), Expect = 9e-22
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 55 gacaaagactgggaacaggcagagcatggatggagctattaatggaaat-atctgttttg 113
|||||||||||||||||||||| |||||||||| |||| ||| |||| ||||||||||
Sbjct: 12 gacaaagactgggaacaggcagtgcatggatggggctactaacagaaaacatctgttttg 71
Query: 114 gctccacccatgcactgcctcttccctggctt 145
|||| |||| ||||||||||||||||||||||
Sbjct: 72 gctctacccctgcactgcctcttccctggctt 103
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 63.9 bits (32), Expect = 8e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 106 ctgttttggctccacccatgcactgcctcttccctggctt 145
||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 67 ctgttgtggctccactcatgcactgcctcttccctggctt 106
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 106 ctgttttggctccacccatgcactgcctcttccctggct 144
||||||| |||| ||||||||||||||||||||||||||
Sbjct: 70 ctgtttttgctctacccatgcactgcctcttccctggct 108
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 109 ttttggctccacccatgcactgcctcttccctggct 144
||||| ||| ||||||||||||||||||||||||||
Sbjct: 73 ttttgtctctacccatgcactgcctcttccctggct 108
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 50.1 bits (25), Expect = 1e-05
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 104 atctgttttggctccacccatgcactgcctcttccctggct 144
||||||| ||||| | | |||||||||||||||||||||||
Sbjct: 99 atctgttgtggctacgctcatgcactgcctcttccctggct 139
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 55 gacaaagactgggaacaggcagagcatggatggagctat 93
||||||| |||||||||||||| ||| | ||||||||||
Sbjct: 13 gacaaaggctgggaacaggcagggcacgaatggagctat 51
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 gggaacaggcagagcatggatggagctat 93
||||| |||||||||||||||||||||||
Sbjct: 23 gggaagaggcagagcatggatggagctat 51
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 107 tgttttggctccacccatgcactgcctcttccctggc 143
|||| |||||| || ||||||||||||||||||||||
Sbjct: 82 tgttgtggctctactcatgcactgcctcttccctggc 118
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 109 ttttggctccacccatgcactgcctcttccctggct 144
|||||| || |||| |||||||||||||||||||||
Sbjct: 71 ttttggttctacccctgcactgcctcttccctggct 106
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 ctgggaacaggcagagcatggatggag 89
||||||| |||||||||||||||||||
Sbjct: 21 ctgggaagaggcagagcatggatggag 47
