miRNEST 2.0, an integrative microRNA resource :: BLAST
>51762_ptc-miR408:pmrd
Length = 105
Score = 95.6 bits (48), Expect = 8e-21
Identities = 78/88 (88%)
Strand = Plus / Plus
Query: 21 aagactgggaacaggcagagcatgggtggaactattaacacaagtatctgttttagcacc 80
||||| ||||||||||||||||||| |||| ||| ||||| ||||| |||||| || |
Sbjct: 12 aagacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctct 71
Query: 81 acccatgcactgcctcttccctggcttg 108
||||||||||||||||||||||||||||
Sbjct: 72 acccatgcactgcctcttccctggcttg 99
>54389_rco-miR408:pmrd
Length = 129
Score = 93.7 bits (47), Expect = 3e-20
Identities = 105/123 (85%), Gaps = 1/123 (0%)
Strand = Plus / Plus
Query: 1 ggtaaagaaagagacggacaaagactgggaacaggcagagcatgggtggaactattaaca 60
|||| ||||| |||| |||||||||||||||||||||| |||||| ||| ||| |||||
Sbjct: 5 ggtacagaaacagacagacaaagactgggaacaggcagtgcatggatggggctactaaca 64
Query: 61 caagt-atctgttttagcaccacccatgcactgcctcttccctggcttgcgggtcttctt 119
|| ||||||||| || | |||| |||||||||||||||||||||| ||| |||||||
Sbjct: 65 gaaaacatctgttttggctctacccctgcactgcctcttccctggcttccggttcttctt 124
Query: 120 ttt 122
|||
Sbjct: 125 ttt 127
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 81.8 bits (41), Expect = 1e-16
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 27 gggaacaggcagagcatgggtggaactattaacacaagtatctgttttagcaccacccat 86
||||||||||||||||||| |||| ||| ||||| ||||| |||||| || | ||||||
Sbjct: 3 gggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctacccat 62
Query: 87 gcactgcctcttccctg 103
|||||||||||||||||
Sbjct: 63 gcactgcctcttccctg 79
>48428_cpt-miR408:pmrd
Length = 100
Score = 77.8 bits (39), Expect = 2e-15
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 20 aaagactgggaacaggcagagcatgggtggaactattaacacaagtatctgttttagcac 79
|||||| ||||||||||||||||||| |||||| ||||||| | |||||||| || |
Sbjct: 6 aaagacggggaacaggcagagcatggatggaaccattaaca-ggttctctgttttggctc 64
Query: 80 cacccatgcactgcctcttccctggct 106
| |||||||||||||||||||||||||
Sbjct: 65 ctcccatgcactgcctcttccctggct 91
>54892_vvi-miR408:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 3e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 68 ctgttttagcaccacccatgcactgcctcttccctggct 106
||||||| || | ||||||||||||||||||||||||||
Sbjct: 60 ctgtttttgctctacccatgcactgcctcttccctggct 98
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 81 acccatgcactgcctcttccctggct 106
||||||||||||||||||||||||||
Sbjct: 30 acccatgcactgcctcttccctggct 5
>47031_ath-miR408:pmrd
Length = 218
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 81 acccatgcactgcctcttccctggct 106
||||||||||||||||||||||||||
Sbjct: 116 acccatgcactgcctcttccctggct 141
>54649_sof-miR408d:pmrd
Length = 215
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 79 ccacccatgcactgcctcttccctggct 106
|||||| |||||||||||||||||||||
Sbjct: 170 ccacccctgcactgcctcttccctggct 197
>51397_ppt-miR408b:pmrd
Length = 144
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 84 catgcactgcctcttccctggctt 107
||||||||||||||||||||||||
Sbjct: 92 catgcactgcctcttccctggctt 115
>46892_aqc-miR408:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 83 ccatgcactgcctcttccctggct 106
||||||||||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggct 1
>51347_ppe-miR408:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 84 catgcactgcctcttccctggct 106
|||||||||||||||||||||||
Sbjct: 74 catgcactgcctcttccctggct 96
>54585_smo-miR408:pmrd
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 atgcactgcctcttccctggct 106
||||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggct 97
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 atgcactgcctcttccctggct 106
||||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggct 85
>48317_bdi-miR408:pmrd
Length = 133
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 ccatgcactgcctcttccctgg 104
||||||||||||||||||||||
Sbjct: 67 ccatgcactgcctcttccctgg 88
>55104_zma-miR408:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 tgcactgcctcttccctggct 106
|||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggct 173
>54690_tae-miR408:pmrd
Length = 187
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 tgcactgcctcttccctggct 106
|||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggct 157
>54648_sof-miR408c:pmrd
Length = 286
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 tgcactgcctcttccctggct 106
|||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268
>54647_sof-miR408b:pmrd
Length = 286
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 tgcactgcctcttccctggct 106
|||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggct 268
>54646_sof-miR408a:pmrd
Length = 283
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 tgcactgcctcttccctggct 106
|||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggct 265
>54499_sbi-miR408:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 tgcactgcctcttccctggct 106
|||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggct 205
>48975_osa-miR408:pmrd
Length = 213
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 86 tgcactgcctcttccctggct 106
|||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggct 174
