miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 103 bits (52), Expect = 6e-22
Identities = 91/104 (87%)
Strand = Plus / Plus
Query: 22 aagactgggaacaggcagagcatgggtggaactattaacacaagtatctgttttagcacc 81
||||| ||||||||||||||||||| |||| ||| ||||| ||||| |||||| || |
Sbjct: 16 aagacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctct 75
Query: 82 acccatgcactgcctcttccctggcttgcgggtcttctttttct 125
|||||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 76 acccatgcactgcctcttccctggcttgtggctcttccttttct 119
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 91.7 bits (46), Expect = 2e-18
Identities = 101/118 (85%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 7 agaaagagacggacaaagactgggaacaggcagagcatgggtggaactattaacacaagt 66
||||| |||| |||||||||||||||||||||| |||||| ||| ||| ||||| ||
Sbjct: 1 agaaacagacagacaaagactgggaacaggcagtgcatggatggggctactaacagaaaa 60
Query: 67 -atctgttttagcaccacccatgcactgcctcttccctggcttgcgggtcttcttttt 123
||||||||| || | |||| |||||||||||||||||||||| ||| ||||||||||
Sbjct: 61 catctgttttggctctacccctgcactgcctcttccctggcttccggttcttcttttt 118
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 69 ctgttttagcaccacccatgcactgcctcttccctggct 107
||||||| || | ||||||||||||||||||||||||||
Sbjct: 70 ctgtttttgctctacccatgcactgcctcttccctggct 108
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 82 acccatgcactgcctcttccctggct 107
||||||||||||||||||||||||||
Sbjct: 83 acccatgcactgcctcttccctggct 108
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 ccacccatgcactgcctcttccctggctt 108
|||| ||||||||||||||||||||||||
Sbjct: 78 ccactcatgcactgcctcttccctggctt 106
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 85 catgcactgcctcttccctggct 107
|||||||||||||||||||||||
Sbjct: 117 catgcactgcctcttccctggct 139
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 82 acccatgcactgcctcttccctggct 107
|||| |||||||||||||||||||||
Sbjct: 81 acccctgcactgcctcttccctggct 106
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 catgcactgcctcttccctggc 106
||||||||||||||||||||||
Sbjct: 97 catgcactgcctcttccctggc 118
