miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 196 bits (99), Expect = 8e-50
Identities = 165/185 (89%), Gaps = 9/185 (4%)
Strand = Plus / Plus
Query: 2 agtggagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctat 61
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 9 agtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctat 68
Query: 62 ggatcccacagccctatctcataataaagactctagtcttcttggataggcttgtggctt 121
||||||||||||||||| | | ||| | || | |||||||||||||||||||
Sbjct: 69 ggatcccacagccctat----aagcagagattata---attttggataggcttgtggctt 121
Query: 122 gcatatctcaggagcttcattacctcttatgttagatccttgtttggattgaagggagct 181
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct: 122 gcatatctcaggagcttcattac--cttgtattagatccttgtttggattgaagggagct 179
Query: 182 ctaca 186
|||||
Sbjct: 180 ctaca 184
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 137 bits (69), Expect = 6e-32
Identities = 159/186 (85%), Gaps = 11/186 (5%)
Strand = Plus / Plus
Query: 2 agtggagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctat 61
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||
Sbjct: 9 agtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttat 68
Query: 62 ggatcccacagccctatctcat-aataaagactctagtcttcttggataggcttgtggct 120
|||||||||||||||||| | | ||| | | | ||||||||||||||||||
Sbjct: 69 ggatcccacagccctatcccgtcaatgggg------ggc--attggataggcttgtggct 120
Query: 121 tgcatatctcaggagcttcattacctcttatgttagatccttgtttggattgaagggagc 180
||||||||||||||||| ||||| || | ||||||||||||||||||||||||||||
Sbjct: 121 tgcatatctcaggagctgcatta--tccaagtttagatccttgtttggattgaagggagc 178
Query: 181 tctaca 186
||||||
Sbjct: 179 tctaca 184
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 109 bits (55), Expect = 1e-23
Identities = 74/79 (93%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 2 agtggagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctat 61
|||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||
Sbjct: 9 agtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctat 68
Query: 62 ggatcccacagccctatct 80
|||| |||||| |||||||
Sbjct: 69 ggat-ccacagtcctatct 86
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 107 bits (54), Expect = 5e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 6 gagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatggat 65
|||||||||||||||||||||| | || |||||||||||| |||||||||||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 66 cccacagccctatc 79
||||||||||||||
Sbjct: 61 cccacagccctatc 74
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 103 bits (52), Expect = 9e-22
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 6 gagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatggat 65
|||||||||||||||||||||||||| |||| |||| ||||||||||| |||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 66 cccacagcccta 77
|||||||||||
Sbjct: 73 tccacagcccta 84
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 85.7 bits (43), Expect = 2e-16
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 2 agtggagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctat 61
|||||||||||||||||||||| ||| ||||| | || |||||||||||||||| ||||
Sbjct: 9 agtggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctat 68
Query: 62 ggatcccacagccctatct 80
|||| || |||||||||||
Sbjct: 69 ggattcctcagccctatct 87
Score = 48.1 bits (24), Expect = 4e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 151 tgttagatccttgtttggattgaagggagctctaca 186
|||| |||| || |||||||||||||||||||||||
Sbjct: 155 tgtttgatcattttttggattgaagggagctctaca 190
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 164 tttggattgaagggagctctaca 186
|||||||||||||||||||||||
Sbjct: 172 tttggattgaagggagctctaca 194
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 165 ttggattgaagggagctctaca 186
||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctaca 180
