miRNEST 2.0, an integrative microRNA resource :: BLAST
>48680_lja-miR396:pmrd
Length = 108
Score = 69.9 bits (35), Expect = 9e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 17 gtcctctttgtattcttcctcagctttcttgaactgcat 55
||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gtcctctttgtattcttccacagctttcttgaactgcat 39
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 190 ttgcggttcaataaagctgtgggaagata 218
|||||||||||||||||||||||||||||
Sbjct: 71 ttgcggttcaataaagctgtgggaagata 99
>51734_ptc-miR396a:pmrd
Length = 123
Score = 65.9 bits (33), Expect = 1e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 189 gttgcggttcaataaagctgtgggaagatacaa 221
|||||||||||||||||||||||||||||||||
Sbjct: 91 gttgcggttcaataaagctgtgggaagatacaa 123
Score = 50.1 bits (25), Expect = 8e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 26 gtattcttcctcagctttcttgaactgca 54
|||||||||| ||||||||||||||||||
Sbjct: 5 gtattcttccacagctttcttgaactgca 33
>48578_gma-miR396a:pmrd
Length = 140
Score = 65.9 bits (33), Expect = 1e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 20 ctctttgtattcttcctcagctttcttgaactgcatc 56
|||||||||||||||| ||||||||||||||||||||
Sbjct: 9 ctctttgtattcttccacagctttcttgaactgcatc 45
Score = 65.9 bits (33), Expect = 1e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 190 ttgcggttcaataaagctgtgggaagatacaaatagg 226
||||||||||||||||||||||||||||||| |||||
Sbjct: 98 ttgcggttcaataaagctgtgggaagatacagatagg 134
>54871_vvi-miR396d:pmrd
Length = 120
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 189 gttgcggttcaataaagctgtgggaagatac 219
|||||||||||||||||||||||||||||||
Sbjct: 84 gttgcggttcaataaagctgtgggaagatac 114
Score = 60.0 bits (30), Expect = 8e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 22 ctttgtattcttcctcagctttcttgaactgcat 55
|||||||||||||| |||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgcat 34
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 191 tgcggttcaataaagctgtgggaagatacaa 221
|||||||||||||||||||||||||||||||
Sbjct: 100 tgcggttcaataaagctgtgggaagatacaa 130
Score = 54.0 bits (27), Expect = 5e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 24 ttgtattcttcctcagctttcttgaactgca 54
|||||||||||| ||||||||||||||||||
Sbjct: 1 ttgtattcttccacagctttcttgaactgca 31
>51735_ptc-miR396b:pmrd
Length = 132
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 191 tgcggttcaataaagctgtgggaagatacaa 221
|||||||||||||||||||||||||||||||
Sbjct: 102 tgcggttcaataaagctgtgggaagatacaa 132
Score = 58.0 bits (29), Expect = 3e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 22 ctttgtattcttcctcagctttcttgaactgca 54
|||||||||||||| ||||||||||||||||||
Sbjct: 1 ctttgtattcttccacagctttcttgaactgca 33
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 190 ttgcggttcaataaagctgtgggaagataca 220
|||||||||||||||||||||||||||||||
Sbjct: 125 ttgcggttcaataaagctgtgggaagataca 155
Score = 56.0 bits (28), Expect = 1e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 cctctttgtattcttcctcagctttcttgaactgca 54
||||| ||||||||||| ||||||||||||||||||
Sbjct: 5 cctctctgtattcttccacagctttcttgaactgca 40
>47008_ath-miR396a:pmrd
Length = 151
Score = 61.9 bits (31), Expect = 2e-10
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 190 ttgcggttcaataaagctgtgggaagataca 220
|||||||||||||||||||||||||||||||
Sbjct: 118 ttgcggttcaataaagctgtgggaagataca 148
Score = 52.0 bits (26), Expect = 2e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 25 tgtattcttcctcagctttcttgaactgca 54
||||||||||| ||||||||||||||||||
Sbjct: 4 tgtattcttccacagctttcttgaactgca 33
>55073_zma-miR396b:pmrd
Length = 136
Score = 50.1 bits (25), Expect = 8e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 21 tctttgtattcttcctcagctttcttgaactgcatct 57
||||||| |||||| |||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatct 46
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 195 gttcaataaagctgtgggaa 214
||||||||||||||||||||
Sbjct: 99 gttcaataaagctgtgggaa 118
>54645_sof-miR396:pmrd
Length = 134
Score = 50.1 bits (25), Expect = 8e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 21 tctttgtattcttcctcagctttcttgaactgcatct 57
||||||| |||||| |||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatct 46
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 195 gttcaataaagctgtgggaa 214
||||||||||||||||||||
Sbjct: 97 gttcaataaagctgtgggaa 116
>54486_sbi-miR396b:pmrd
Length = 128
Score = 50.1 bits (25), Expect = 8e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 21 tctttgtattcttcctcagctttcttgaactgcatct 57
||||||| |||||| |||||||||||||||||||||
Sbjct: 10 tctttgtgatcttccacagctttcttgaactgcatct 46
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 195 gttcaataaagctgtgggaa 214
||||||||||||||||||||
Sbjct: 91 gttcaataaagctgtgggaa 110
>48946_osa-miR396b:pmrd
Length = 116
Score = 50.1 bits (25), Expect = 8e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 30 tcttcctcagctttcttgaactgcatctt 58
|||||| ||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgcatctt 37
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 195 gttcaataaagctgtgggaa 214
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>48508_ghr-miR396c:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 8e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 189 gttgcggttcaataaagctgtggga 213
|||||||||||||||||||||||||
Sbjct: 91 gttgcggttcaataaagctgtggga 115
>48507_ghr-miR396b:pmrd
Length = 115
Score = 50.1 bits (25), Expect = 8e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 189 gttgcggttcaataaagctgtggga 213
|||||||||||||||||||||||||
Sbjct: 91 gttgcggttcaataaagctgtggga 115
>46887_aqc-miR396a:pmrd
Length = 122
Score = 50.1 bits (25), Expect = 8e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 190 ttgcggttcaataaagctgtgggaa 214
|||||||||||||||||||||||||
Sbjct: 97 ttgcggttcaataaagctgtgggaa 121
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 32 ttcctcagctttcttgaactgcat 55
|||| |||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>48486_gcl-miR396b:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 190 ttgcggttcaataaagctgtggga 213
||||||||||||||||||||||||
Sbjct: 78 ttgcggttcaataaagctgtggga 101
>48485_gcl-miR396a:pmrd
Length = 101
Score = 48.1 bits (24), Expect = 3e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 190 ttgcggttcaataaagctgtggga 213
||||||||||||||||||||||||
Sbjct: 24 ttgcggttcaataaagctgtggga 1
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 32 ttcctcagctttcttgaactgcatc 56
|||| ||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaactgcatc 77
>55079_zma-miR396h:pmrd
Length = 116
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 30 tcttcctcagctttcttgaactgcatc 56
|||||| ||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcatc 28
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 195 gttcaataaagctgtgggaa 214
||||||||||||||||||||
Sbjct: 95 gttcaataaagctgtgggaa 114
>55083_zma-miR396l:pmrd
Length = 97
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 32 ttcctcagctttcttgaactgcatct 57
|||| |||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcatct 26
>55074_zma-miR396c:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 tcttcctcagctttcttgaactgcat 55
|||||| |||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaactgcat 27
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 195 gttcaataaagctgtgggaa 214
||||||||||||||||||||
Sbjct: 83 gttcaataaagctgtgggaa 102
>55072_zma-miR396a:pmrd
Length = 137
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 tcttcctcagctttcttgaactgcat 55
|||||| |||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 195 gttcaataaagctgtgggaa 214
||||||||||||||||||||
Sbjct: 100 gttcaataaagctgtgggaa 119
>54485_sbi-miR396a:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 5e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 tcttcctcagctttcttgaactgcat 55
|||||| |||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaactgcat 44
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 195 gttcaataaagctgtgggaa 214
||||||||||||||||||||
Sbjct: 88 gttcaataaagctgtgggaa 107
>48945_osa-miR396a:pmrd
Length = 154
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 30 tcttcctcagctttcttgaactgca 54
|||||| ||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaactgca 33
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 195 gttcaataaagctgtgggaa 214
||||||||||||||||||||
Sbjct: 126 gttcaataaagctgtgggaa 145
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 32 ttcctcagctttcttgaactgcat 55
|||| |||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 32 ttcctcagctttcttgaactgcat 55
|||| |||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactgcat 24
