miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>41244_csi-MIR397:mirbase
Length = 156
Score = 52.0 bits (26), Expect = 9e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 aaaaaacctcattgagtgcagcgttgatga 31
||||||| ||||||||||||||||||||||
Sbjct: 10 aaaaaacatcattgagtgcagcgttgatga 39
>41664_vvi-MIR397a:mirbase
Length = 118
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 aaaacctcattgagtgcagcgttgatga 31
||||| ||||||||||||||||||||||
Sbjct: 5 aaaacatcattgagtgcagcgttgatga 32
>40380_rco-MIR397:mirbase
Length = 157
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 5 aaacctcattgagtgcagcgttgatga 31
|||| ||||||||||||||||||||||
Sbjct: 1 aaacatcattgagtgcagcgttgatga 27
>42587_sbi-MIR397:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tcattgagtgcagcgttgatga 31
||||||||||||||||||||||
Sbjct: 1 tcattgagtgcagcgttgatga 22
>42037_osa-MIR397a:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tcattgagtgcagcgttgatga 31
||||||||||||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatga 32
>41798_bdi-MIR397b:mirbase
Length = 292
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tcattgagtgcagcgttgatga 31
||||||||||||||||||||||
Sbjct: 32 tcattgagtgcagcgttgatga 53
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tcattgagtgcagcgttgatga 31
||||||||||||||||||||||
Sbjct: 178 tcattgagtgcagcgttgatga 199
>41797_bdi-MIR397a:mirbase
Length = 124
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tcattgagtgcagcgttgatga 31
||||||||||||||||||||||
Sbjct: 18 tcattgagtgcagcgttgatga 39
>41442_ptc-MIR397a:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tcattgagtgcagcgttgatga 31
||||||||||||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatga 32
>41143_tcc-MIR397:mirbase
Length = 123
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tcattgagtgcagcgttgatga 31
||||||||||||||||||||||
Sbjct: 21 tcattgagtgcagcgttgatga 42
>39880_aly-MIR397b:mirbase
Length = 131
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 aaacctcattgagtgcagcgttgatg 30
|||| |||||||||||||||||||||
Sbjct: 14 aaacatcattgagtgcagcgttgatg 39
>41443_ptc-MIR397b:mirbase
Length = 114
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 cattgagtgcagcgttgatga 31
|||||||||||||||||||||
Sbjct: 12 cattgagtgcagcgttgatga 32
>40298_bna-MIR397b:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tcattgagtgcagcgttgatg 30
|||||||||||||||||||||
Sbjct: 6 tcattgagtgcagcgttgatg 26
>40297_bna-MIR397a:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tcattgagtgcagcgttgatg 30
|||||||||||||||||||||
Sbjct: 6 tcattgagtgcagcgttgatg 26
>40087_ath-MIR397a:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tcattgagtgcagcgttgatg 30
|||||||||||||||||||||
Sbjct: 11 tcattgagtgcagcgttgatg 31
>39879_aly-MIR397a:mirbase
Length = 126
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 tcattgagtgcagcgttgatg 30
|||||||||||||||||||||
Sbjct: 20 tcattgagtgcagcgttgatg 40
>42038_osa-MIR397b:mirbase
Length = 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 attgagtgcagcgttgatga 31
||||||||||||||||||||
Sbjct: 13 attgagtgcagcgttgatga 32
>41547_sly-MIR397:mirbase
Length = 116
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 attgagtgcagcgttgatga 31
||||||||||||||||||||
Sbjct: 20 attgagtgcagcgttgatga 39
>39382_pab-MIR397:mirbase
Length = 134
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 tcattgagtgcagcgttgatgata 33
||||||||||||||||||| ||||
Sbjct: 17 tcattgagtgcagcgttgacgata 40
