miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>40340_rco-MIR160b:mirbase
Length = 96
Score = 50.1 bits (25), Expect = 4e-07
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 65 ccatggattggcaactgcggctggcgtgtgaggagccaagcatac 109
|||||||||||| | ||| | ||||||| ||||||||||||||||
Sbjct: 48 ccatggattggctattgccggtggcgtgcgaggagccaagcatac 92
>41312_ptc-MIR160h:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgcatgcca 42
|||||||||||||||||||||||
Sbjct: 9 tgtgcctggctccctgcatgcca 31
>42703_zma-MIR160c:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgcatgccactc 45
|||||||||||||||| |||||||||
Sbjct: 5 tgtgcctggctccctgtatgccactc 30
>42677_ttu-MIR160:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgcatgccactc 45
|||||||||||||||| |||||||||
Sbjct: 7 tgtgcctggctccctgtatgccactc 32
>41926_osa-MIR160d:mirbase
Length = 142
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 78 actgcggctggcgtgtgaggagccaagcat 107
||||||| ||||||| ||||||||||||||
Sbjct: 109 actgcggatggcgtgcgaggagccaagcat 138
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgcatgccactcg 46
|||||||||||||| ||||||||||
Sbjct: 8 tgcctggctccctgtatgccactcg 32
>41925_osa-MIR160c:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgcatgccactc 45
|||||||||||||||| |||||||||
Sbjct: 5 tgtgcctggctccctgtatgccactc 30
>41734_bdi-MIR160d:mirbase
Length = 150
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgcatgccactc 45
|||||||||||||||| |||||||||
Sbjct: 29 tgtgcctggctccctgtatgccactc 54
>41575_vvi-MIR160c:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 80 tgcggctggcgtgtgaggagccaagcatac 109
||||| ||||||| ||||||||||||||||
Sbjct: 68 tgcgggtggcgtgcgaggagccaagcatac 97
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgcatgccactcgta 48
|||||||||||||||| ||||||| ||||
Sbjct: 9 tgtgcctggctccctgtatgccacacgta 37
>39457_ppt-MIR160c:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 gcctggctccctgcatgccact 44
||||||||||||||||||||||
Sbjct: 12 gcctggctccctgcatgccact 33
>42705_zma-MIR160e:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgcatgccactcg 46
|||||||||||||| ||||||||||
Sbjct: 9 tgcctggctccctgtatgccactcg 33
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 79 ctgcggctggcgtgtgaggagccaagcat 107
|||||||||||||| |||| |||||||||
Sbjct: 59 ctgcggctggcgtgcgaggtgccaagcat 87
>42704_zma-MIR160d:mirbase
Length = 142
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgcatgccactcg 46
|||||||||||||| ||||||||||
Sbjct: 21 tgcctggctccctgtatgccactcg 45
>42636_tae-MIR160:mirbase
Length = 148
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgcatgccactcg 46
|||||||||||||| ||||||||||
Sbjct: 22 tgcctggctccctgtatgccactcg 46
>42500_sbi-MIR160e:mirbase
Length = 95
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgcatgccactcg 46
|||||||||||||| ||||||||||
Sbjct: 1 tgcctggctccctgtatgccactcg 25
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 79 ctgcggctggcgtgtgaggagccaagca 106
|||||||||||||| |||| ||||||||
Sbjct: 68 ctgcggctggcgtgcgaggtgccaagca 95
>42499_sbi-MIR160d:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgcatgccactcg 46
|||||||||||||| ||||||||||
Sbjct: 1 tgcctggctccctgtatgccactcg 25
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 78 actgcggctggcgtgtgaggagccaagca 106
||||||| ||||||| |||||||||||||
Sbjct: 72 actgcggatggcgtgcgaggagccaagca 100
>41924_osa-MIR160b:mirbase
Length = 139
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 21 gtgcctggctccctgcatgccactc 45
||||||||||||||| |||||||||
Sbjct: 29 gtgcctggctccctgtatgccactc 53
>41733_bdi-MIR160c:mirbase
Length = 148
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 19 ctgtgcctggctccctgcatgccac 43
||||||||||||||||| |||||||
Sbjct: 28 ctgtgcctggctccctgtatgccac 52
>41731_bdi-MIR160a:mirbase
Length = 175
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgcatgccactcg 46
|||||||||||||| ||||||||||
Sbjct: 32 tgcctggctccctgtatgccactcg 56
>42702_zma-MIR160b:mirbase
Length = 121
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgcatgccac 43
|||||||||||||||| |||||||
Sbjct: 19 tgtgcctggctccctgtatgccac 42
>42498_sbi-MIR160c:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 22 tgcctggctccctgcatgccactc 45
|||||||||||||| |||||||||
Sbjct: 1 tgcctggctccctgtatgccactc 24
>41923_osa-MIR160a:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgcatgccac 43
|||||||||||||||| |||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>41308_ptc-MIR160d:mirbase
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 tggcgtgtgaggagccaagcatac 109
||||||| ||||||||||||||||
Sbjct: 75 tggcgtgcgaggagccaagcatac 98
>41305_ptc-MIR160a:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 86 tggcgtgtgaggagccaagcatac 109
||||||| ||||||||||||||||
Sbjct: 74 tggcgtgcgaggagccaagcatac 97
>39374_pab-MIR160a:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 tgtgcctggctccctgcatgccac 43
|||||||||||||||| |||||||
Sbjct: 12 tgtgcctggctccctgtatgccac 35
