miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 65.9 bits (33), Expect = 2e-10
Identities = 67/77 (87%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaaaggagggtcttggttgggtggattgagctgctggtttat 70
||||||||||||||||||||| ||||||||| ||||| ||||||||||||| ||||
Sbjct: 10 gtggagctccttgaagtccaatagagggtctt-actgggtagattgagctgctgacttat 68
Query: 71 ggattccactgccctat 87
|||| |||| |||||||
Sbjct: 69 ggatcccacagccctat 85
Score = 63.9 bits (32), Expect = 9e-10
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 136 ggataggcttgtggtttgcataactcaggagctgcatcaacccagcct-gacctttattt 194
|||||||||||||| ||||||| |||||||||||||| | || || | || | || |||
Sbjct: 105 ggataggcttgtggcttgcatatctcaggagctgcattatccaagtttagatccttgttt 164
Query: 195 ggattgaagggagctctaca 214
||||||||||||||||||||
Sbjct: 165 ggattgaagggagctctaca 184
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 58.0 bits (29), Expect = 5e-08
Identities = 66/77 (85%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 139 taggcttgtggtttgcataactcaggagctgcatcaacc-cagcctgacctttatttgga 197
|||||||| |||||||||| |||||||||||||| | || ||| | | | || ||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattaccctaagcttaatccttgtttgga 167
Query: 198 ttgaagggagctctaca 214
|||||||||||||||||
Sbjct: 168 ttgaagggagctctaca 184
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 58.0 bits (29), Expect = 5e-08
Identities = 66/77 (85%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 11 gtggagctccttgaagtccaaaggagggtcttggttgggtggattgagctgctggtttat 70
||||||||||||||||||||| |||| |||| | ||||| ||||||||||||| |||
Sbjct: 10 gtggagctccttgaagtccaatagaggatctt-gatgggtagattgagctgctgagctat 68
Query: 71 ggattccactgccctat 87
|||| |||| |||||||
Sbjct: 69 ggatcccacagccctat 85
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 192 tttggattgaagggagctctacatct 217
||||||||||||||||||||||||||
Sbjct: 162 tttggattgaagggagctctacatct 187
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 136 ggataggcttgtggtttgcataactcaggagct 168
|||||||||||||| ||||||| ||||||||||
Sbjct: 105 ggataggcttgtggcttgcatatctcaggagct 137
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 58.0 bits (29), Expect = 5e-08
Identities = 71/85 (83%)
Strand = Plus / Plus
Query: 133 ttgggataggcttgtggtttgcataactcaggagctgcatcaacccagcctgacctttat 192
||||||||||||| ||| |||||| | |||||||||||||||||| | || | | |
Sbjct: 183 ttgggataggcttatggcttgcatgccccaggagctgcatcaaccctacatggaccctct 242
Query: 193 ttggattgaagggagctctacatct 217
||||||||||||||||||| |||||
Sbjct: 243 ttggattgaagggagctctgcatct 267
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 192 tttggattgaagggagctctacatct 217
||||||||||||||||||||||||||
Sbjct: 172 tttggattgaagggagctctacatct 197
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 52.0 bits (26), Expect = 3e-06
Identities = 69/82 (84%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 137 gataggcttgtggtttgcataactcaggagctgcatcaac-ccagcctgacctttatttg 195
|||||||||||||||||||| || |||||| | |||||| || |||||| | ||||
Sbjct: 99 gataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctttg 158
Query: 196 gattgaagggagctctacatct 217
|||||||||||||||| |||||
Sbjct: 159 gattgaagggagctctgcatct 180
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 192 tttggattgaagggagctctacat 215
||||||||||||||||||||||||
Sbjct: 168 tttggattgaagggagctctacat 191
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 48.1 bits (24), Expect = 5e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 137 gataggcttgtggtttgcataactcaggagctgcat 172
|||||| |||||||||||||| |||||||||||||
Sbjct: 106 gataggtttgtggtttgcatatatcaggagctgcat 141
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 48.1 bits (24), Expect = 5e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 132 tttgggataggcttgtggtttgcataactcaggagctgca 171
|||| |||||||||||||||||||| || ||||||||||
Sbjct: 140 tttgagataggcttgtggtttgcatgaccgaggagctgca 179
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 48.1 bits (24), Expect = 5e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 132 tttgggataggcttgtggtttgcataactcaggagctgca 171
|||| |||||||||||||||||||| || ||||||||||
Sbjct: 151 tttgagataggcttgtggtttgcatgaccgaggagctgca 190
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 44.1 bits (22), Expect = 8e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 192 tttggattgaagggagctctacatct 217
|||||||||||||||||||| |||||
Sbjct: 176 tttggattgaagggagctcttcatct 201
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 44.1 bits (22), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 193 ttggattgaagggagctctaca 214
||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctaca 180
