miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 75.8 bits (38), Expect = 9e-14
Identities = 78/89 (87%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccacacgtagagacccatctgttt--atgatcggcta-ct 65
||||||||||||||||||||||||||||||||||| || ||| ||| ||||| |
Sbjct: 2 tgtgcctggctccctgtatgccacacgtagagaccactccctttcccggattggctattt 61
Query: 66 gcgggtggcgtgcgaggagccaagcatac 94
|||||||||||||||||||||||||||||
Sbjct: 62 gcgggtggcgtgcgaggagccaagcatac 90
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 65.9 bits (33), Expect = 9e-11
Identities = 74/87 (85%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccacacgtagagacccatct---gtttatgatcggctactgc 67
||||||||||||||||||||||| | | ||||| |||| |||| ||| |||| |||
Sbjct: 4 tgcctggctccctgtatgccacaagcaaagaccaatcttttgttttagattggctgttgc 63
Query: 68 gggtggcgtgcgaggagccaagcatac 94
||||||||||||||||||||||||||
Sbjct: 64 cggtggcgtgcgaggagccaagcatac 90
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 61 ctactgcgggtggcgtgcgaggagccaagcatac 94
|||| |||||||||||||||||||||||||||||
Sbjct: 57 ctacggcgggtggcgtgcgaggagccaagcatac 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 59 ggctactgcgggtggcgtgcgaggagccaagcatac 94
||||| ||| ||||||||||||||||||||||||||
Sbjct: 55 ggctattgccggtggcgtgcgaggagccaagcatac 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
burmannicoides
Length = 87
Score = 56.0 bits (28), Expect = 9e-08
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccacacgtagagacccatctgtttatgatcggctactgcg 68
|||||||||||||||||||||||||| | || ||| |||| | |||| || |||| |
Sbjct: 2 tgtgcctggctccctgtatgccacacatggacaccaatctttgggtgattggtgactgtg 61
Query: 69 ggtggcgtgcgaggagccaagcat 92
||||| |||| |||||||||||||
Sbjct: 62 ggtggtgtgcaaggagccaagcat 85
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 61 ctactgcgggtggcgtgcgaggagccaagcat 92
||||||||| ||||||||||||||||||||||
Sbjct: 73 ctactgcggatggcgtgcgaggagccaagcat 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 56.0 bits (28), Expect = 9e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 61 ctactgcgggtggcgtgcgaggagccaagcat 92
||||||||| ||||||||||||||||||||||
Sbjct: 103 ctactgcggatggcgtgcgaggagccaagcat 134
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 59 ggctactgcgggtggcgtgcgaggagccaagcata 93
|||| |||| |||||||||||||||||||||||||
Sbjct: 55 ggctgctgccggtggcgtgcgaggagccaagcata 89
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccacac 34
||||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccacac 27
>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccacac 34
||||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccacac 27
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccacac 34
||||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccacac 27
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccacacgtaga 39
||||||||||||||||||||||| |||||
Sbjct: 4 tgcctggctccctgtatgccacaagtaga 32
>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
Length = 92
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccacac 34
|||||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgccacac 27
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 69 ggtggcgtgcgaggagccaagcat 92
||||||||||||||||||||||||
Sbjct: 63 ggtggcgtgcgaggagccaagcat 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccaca 33
||||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgccaca 26
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgccac 32
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccaca 33
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccaca 26
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 tgtgcctggctccctgtatgcca 31
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 gtgcctggctccctgtatgccac 32
|||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgccac 25
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;EU970393.1/2-98 4577:Zea mays
Length = 97
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 actgcgggtggcgtgcgaggagccaa 88
||||||| ||||||||||||||||||
Sbjct: 72 actgcggatggcgtgcgaggagccaa 97
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABEU01007064.1/27442-27356 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 tgcctggctccctgtatgccac 32
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
