miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 67.9 bits (34), Expect = 8e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 22 tttgagaggttgaagctgccagcatgatctggta 55
||||||||||||||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggta 37
Score = 58.0 bits (29), Expect = 8e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 254 tggttccatcaagtcatctagcagcttcaatcactca 290
||||||||||| ||||||| |||||||||||||||||
Sbjct: 395 tggttccatcaggtcatcttgcagcttcaatcactca 431
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 67.9 bits (34), Expect = 8e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 22 tttgagaggttgaagctgccagcatgatctggta 55
||||||||||||||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggta 37
Score = 60.0 bits (30), Expect = 2e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 254 tggttccatcaagtcatctagcagcttcaatcactcac 291
||||||||||| ||||||| ||||||||||||||||||
Sbjct: 396 tggttccatcaggtcatcttgcagcttcaatcactcac 433
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 67.9 bits (34), Expect = 8e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 22 tttgagaggttgaagctgccagcatgatctggta 55
||||||||||||||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggta 37
Score = 58.0 bits (29), Expect = 8e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 254 tggttccatcaagtcatctagcagcttcaatcactca 290
||||||||||| ||||||| |||||||||||||||||
Sbjct: 114 tggttccatcaggtcatcttgcagcttcaatcactca 150
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 65.9 bits (33), Expect = 3e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 22 tttgagaggttgaagctgccagcatgatctggt 54
|||||||||||||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctggt 36
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 261 atcaagtcatctagcagcttcaatcactcac 291
|||| ||||||| ||||||||||||||||||
Sbjct: 321 atcaggtcatcttgcagcttcaatcactcac 351
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 61.9 bits (31), Expect = 5e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 24 tgagaggttgaagctgccagcatgatctggt 54
|||||||||||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 60.0 bits (30), Expect = 2e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 22 tttgagaggttgaagctgccagcatgatctggta 55
|||||||| |||||||||||||||||||||||||
Sbjct: 4 tttgagagattgaagctgccagcatgatctggta 37
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 256 gttccatcaagtcatctagcagcttcaatcactca 290
||||||||| ||||||| |||||||||||| ||||
Sbjct: 305 gttccatcaggtcatcttgcagcttcaatccctca 339
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 58.0 bits (29), Expect = 8e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 24 tgagaggttgaagctgccagcatgatctg 52
|||||||||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 24 tgagaggttgaagctgccagcatgatctggt 54
||||||| |||||||||||||||||||||||
Sbjct: 6 tgagaggctgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU952646.1/178-293 4577:Zea mays
Length = 116
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 24 tgagaggttgaagctgccagcatgatctgg 53
|||||| |||||||||||||||||||||||
Sbjct: 6 tgagagcttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctggta 55
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggta 37
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctggta 55
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggta 37
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctggta 55
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggta 37
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 48.1 bits (24), Expect = 8e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 30 gttgaagctgccagcatgatctgg 53
||||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 gttgaagctgccagcatgatctg 52
|||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 30 gttgaagctgccagcatgatctg 52
|||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctggt 54
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctggt 54
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
Japonica Group
Length = 278
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 32 tgaagctgccagcatgatctggt 54
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
