miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00689;MIR390;AC235430.1/64014-64117 3847:Glycine max (soybean)
Length = 104
Score = 77.8 bits (39), Expect = 4e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccatggatga 55
|||||||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccatggatga 43
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagcttct 134
||||||||||||||||||||||| ||||||
Sbjct: 71 gcgctatccatcctgagtttcatggcttct 100
>RF00689;MIR390;ABIM01001395.1/10315-10183 3649:Carica papaya
(papaya)
Length = 133
Score = 67.9 bits (34), Expect = 4e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccatg 50
||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccatg 38
>RF00689;MIR390;FM163955.1/147-245 3702:Arabidopsis thaliana
(thale cress)
Length = 99
Score = 67.9 bits (34), Expect = 4e-11
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccatg 50
||||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccatg 38
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcat 127
|||||||||||||||||||||||
Sbjct: 66 gcgctatccatcctgagtttcat 88
>RF00689;MIR390;CAAP02001430.1/46926-46781 29760:Vitis vinifera
Length = 146
Score = 67.9 bits (34), Expect = 4e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 13 tgggagaatctgtaaagctcaggagggatagcgccatg 50
||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 tgggagaatctgttaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AC189543.2/98818-98914 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccat 49
|||||||||||||||||||||||||||||||||
Sbjct: 5 agaatctgtaaagctcaggagggatagcgccat 37
>RF00689;MIR390;AARH01000472.1/96655-96783 3694:Populus
trichocarpa
Length = 129
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 14 gggagaatctgtaaagctcaggagggatagcgccatg 50
|||||||||||| ||||||||||||||||||||||||
Sbjct: 2 gggagaatctgttaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AM442301.1/4341-4465 29760:Vitis vinifera
Length = 125
Score = 63.9 bits (32), Expect = 6e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 13 tgggagaatctgtaaagctcaggagggatagcgcca 48
||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tgggagaatctgttaagctcaggagggatagcgcca 36
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagcttcttc 136
||||||||||||||||||||||| | ||||||
Sbjct: 92 gcgctatccatcctgagtttcattggttcttc 123
>RF00689;MIR390;ABIM01002245.1/567-665 3649:Carica papaya (papaya)
Length = 99
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccatgg 51
||||||||| |||||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccatgg 39
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagcttcttc 136
|||||||||||||||||||||| ||||||||
Sbjct: 66 gcgctatccatcctgagtttcactgcttcttc 97
>RF00689;MIR390;AARH01003823.1/151507-151375 3694:Populus
trichocarpa
Length = 133
Score = 60.0 bits (30), Expect = 9e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 13 tgggagaatctgtaaagctcaggagggatagcgccatg 50
|||||| |||||| ||||||||||||||||||||||||
Sbjct: 1 tgggaggatctgttaagctcaggagggatagcgccatg 38
>RF00689;MIR390;AC143338.29/35527-35410 3880:Medicago truncatula
(barrel medic)
Length = 118
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagcttcttcat 138
||||||||||||||||||||||| ||||||||||
Sbjct: 85 gcgctatccatcctgagtttcatggcttcttcat 118
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgccat 49
||||||||| |||||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgccat 37
>RF00689;MIR390;AC189355.2/75830-75939 51351:Brassica rapa subsp.
pekinensis
Length = 110
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 22 ctgtaaagctcaggagggatagcgccatg 50
|||||||||||||||||||||||||||||
Sbjct: 10 ctgtaaagctcaggagggatagcgccatg 38
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagcttcttc 136
||||||||||||||||||| ||| ||||||||
Sbjct: 77 gcgctatccatcctgagttccatggcttcttc 108
>RF00689;MIR390;AASG02008232.1/8506-8369 3988:Ricinus communis
(castor bean)
Length = 138
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 27 aagctcaggagggatagcgccatggatgaatat 59
|||||||||||||||||||||||||||| ||||
Sbjct: 15 aagctcaggagggatagcgccatggatggatat 47
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 102 atagcgctatccatcctgagtttcatagcttcttc 136
|||||||||||||||||||||||||| | ||||||
Sbjct: 102 atagcgctatccatcctgagtttcattggttcttc 136
>RF00689;MIR390;AB025632.1/22985-23104 3702:Arabidopsis thaliana
(thale cress)
Length = 120
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagcttcttc 136
||||||||||||||||||| ||||||||||||
Sbjct: 87 gcgctatccatcctgagttccatagcttcttc 118
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 25 taaagctcaggagggatagcgccatgg 51
|||||||||||||||||||||||||||
Sbjct: 13 taaagctcaggagggatagcgccatgg 39
>RF00689;MIR390;AARH01006918.1/30613-30728 3694:Populus
trichocarpa
Length = 116
Score = 54.0 bits (27), Expect = 6e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 17 agaatctgtaaagctcaggagggatagcgcc 47
||||||||| |||||||||||||||||||||
Sbjct: 5 agaatctgttaagctcaggagggatagcgcc 35
>RF00689;MIR390;AASG02000259.1/53979-54102 3988:Ricinus communis
(castor bean)
Length = 124
Score = 50.1 bits (25), Expect = 9e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 15 ggagaatctgtaaagctcaggagggatagcgcc 47
||||| ||||| |||||||||||||||||||||
Sbjct: 3 ggagactctgttaagctcaggagggatagcgcc 35
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 105 gcgctatccatcctgagtttcatagcttcttc 136
|||||||||||||||||||||| || ||||||
Sbjct: 91 gcgctatccatcctgagtttcacaggttcttc 122
