miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 133 bits (67), Expect = 1e-30
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 12 gagtggagctccttgaagtccaacagaggatctaacaggtaagattaagctgctgaccta 71
||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||
Sbjct: 8 gagtggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgaccta 67
Query: 72 tggattcctcagtcctatctatt 94
|||||||||||| ||||||||||
Sbjct: 68 tggattcctcagccctatctatt 90
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 69.9 bits (35), Expect = 1e-11
Identities = 139/171 (81%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 12 gagtggagctccttgaagtccaacagaggatctaacaggtaagattaagctgctgaccta 71
||||||||||||||||||||||| ||||| ||| | || ||||||||||||| | |||
Sbjct: 8 gagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagcta 67
Query: 72 tggattcctcagtcctatctattatttgataggataggtaagtgggtagcatatgtcagg 131
|||| ||| ||||||||||||| | || ||||||||| | || | |||||| |||||
Sbjct: 68 tgga-tccacagtcctatctatcaaccga-aggataggtttgcggcttgcatatctcagg 125
Query: 132 agctacattaccctaagttggatcgcttattggatcgaagggagctctaaa 182
|||| ||| || | ||| |||| ||| |||||| |||||||||||||||
Sbjct: 126 agctttattgcctaatgttagatccctttttggattgaagggagctctaaa 176
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 69.9 bits (35), Expect = 1e-11
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 12 gagtggagctccttgaagtccaacagaggatctaacaggtaagattaagctgctgaccta 71
||||||||||||||||||||||| ||||| ||| || || ||||| |||||||||| ||
Sbjct: 8 gagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactta 67
Query: 72 tggattcctcagtcctatc 90
||||| || ||| ||||||
Sbjct: 68 tggatcccacagccctatc 86
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 61.9 bits (31), Expect = 3e-09
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 36 agaggatctaacaggtaagattaagctgctgacctatggattcctcagtcctatctatt 94
||||||||||| ||| || ||| ||||||||| |||||||| ||||| |||||||||||
Sbjct: 32 agaggatctaagagggaaaattgagctgctgatctatggatccctcaatcctatctatt 90
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 60.0 bits (30), Expect = 1e-08
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 12 gagtggagctccttgaagtccaacagaggatctaacaggtaagattaagctgctgaccta 71
||||||||||||||||||||||| ||||||||| || ||||| ||||||||| |||
Sbjct: 8 gagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagcta 67
Query: 72 tggattcctcagtcctat 89
||||| || ||| |||||
Sbjct: 68 tggatcccacagccctat 85
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 48.1 bits (24), Expect = 5e-05
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 17 gagctccttgaagtccaacagaggatctaacaggtaagattaagctgctgacctatggat 76
|||||||||||||||||| ||||||| | |||| |||| |||||| || ||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 77 tcctcagtccta 88
||| ||| ||||
Sbjct: 73 tccacagcccta 84
