miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTX 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>sp|Q28ZX3|PABP2_DROPS Polyadenylate-binding protein 2 OS=Drosophila
pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1
Length = 225
Score = 47.8 bits (112), Expect = 2e-05
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Frame = +1
Query: 1 MKKRLKEMEDESAALLEMQAKVEKEM--GSVQDPXXXXXTQANREEVDGRSVFVGNVD 168
+K R+KEME+E+ + +MQ++V+K+M GS + ++E+D RSV+VGNVD
Sbjct: 47 IKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGNVD 104
>sp|Q7KNF2|PABP2_DROME Polyadenylate-binding protein 2 OS=Drosophila
melanogaster GN=Pabp2 PE=1 SV=1
Length = 224
Score = 47.8 bits (112), Expect = 2e-05
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Frame = +1
Query: 1 MKKRLKEMEDESAALLEMQAKVEKEM--GSVQDPXXXXXTQANREEVDGRSVFVGNVD 168
+K R+KEME+E+ + +MQ++V+K+M GS + ++E+D RSV+VGNVD
Sbjct: 47 IKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVD 104
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus
musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 44.3 bits (103), Expect = 2e-04
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 1 MKKRLKEMEDESAALLEMQAKVEKEMGSVQDPXXXXXTQANRE---EVDGRSVFVGNVD 168
+K R++EME+E+ L E+Q +VEK+M P + E E D RS++VGNVD
Sbjct: 118 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVD 176
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus
tropicalis GN=pabpn1 PE=2 SV=1
Length = 296
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 1 MKKRLKEMEDESAALLEMQAKVEKEMGSVQDPXXXXXTQANRE---EVDGRSVFVGNVD 168
+K R++EME+E+ L E+Q +VEK+M P + E E D RS++VGNVD
Sbjct: 113 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVD 171
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo
sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 1 MKKRLKEMEDESAALLEMQAKVEKEMGSVQDPXXXXXTQANRE---EVDGRSVFVGNVD 168
+K R++EME+E+ L E+Q +VEK+M P + E E D RS++VGNVD
Sbjct: 122 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVD 180
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus
GN=PABPN1 PE=1 SV=3
Length = 306
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 1 MKKRLKEMEDESAALLEMQAKVEKEMGSVQDPXXXXXTQANRE---EVDGRSVFVGNVD 168
+K R++EME+E+ L E+Q +VEK+M P + E E D RS++VGNVD
Sbjct: 122 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVD 180
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus
laevis GN=pabpn1-b PE=2 SV=1
Length = 295
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 1 MKKRLKEMEDESAALLEMQAKVEKEMGSVQDPXXXXXTQANRE---EVDGRSVFVGNVD 168
+K R++EME+E+ L E+Q +VEK+M P + E E D RS++VGNVD
Sbjct: 112 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVD 170
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus
laevis GN=pabpn1-a PE=2 SV=1
Length = 296
Score = 43.9 bits (102), Expect = 3e-04
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = +1
Query: 1 MKKRLKEMEDESAALLEMQAKVEKEMGSVQDPXXXXXTQANRE---EVDGRSVFVGNVD 168
+K R++EME+E+ L E+Q +VEK+M P + E E D RS++VGNVD
Sbjct: 113 IKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVD 171
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2
OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1
Length = 222
Score = 42.4 bits (98), Expect = 0.001
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
Frame = +1
Query: 1 MKKRLKEMEDESAALLEMQAKVEKEM---------GSVQDPXXXXXTQANREEVDGRSVF 153
MKKR +EME+E+ L E+Q +E + G++ T ++EE+D RSV+
Sbjct: 47 MKKRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIGGGGGLMNT--DQEEIDSRSVY 104
Query: 154 VGNVD 168
VGNVD
Sbjct: 105 VGNVD 109
