miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;ABXC01000415.1/124553-124445 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 9 ttactactcccttcgttccaaattataagac 39
|||||||||||| ||||||||||||||||||
Sbjct: 109 ttactactccctccgttccaaattataagac 79
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 ttactactcccttcgttccaaattataagac 39
||||||||| || ||||||||||||||||||
Sbjct: 1 ttactactctctccgttccaaattataagac 31
>RF00906;MIR1122;ABXC01006180.1/72632-72485 4558:Sorghum bicolor
(sorghum)
Length = 148
Score = 52.0 bits (26), Expect = 5e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 13 tactcccttcgttccaaattataagacatt 42
|||||||| |||||||||||||||||||||
Sbjct: 144 tactccctccgttccaaattataagacatt 115
>RF00906;MIR1122;ABXC01000869.1/217-331 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 11 actactcccttcgttccaaattataagacatta 43
|||||||||| |||||||||||||||||||||
Sbjct: 3 actactccctctgttccaaattataagacatta 35
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactcccttcgttccaaattataagac 39
|||||||| ||||||||||||||||||
Sbjct: 111 tactccctccgttccaaattataagac 85
>RF00906;MIR1122;ABXC01002486.1/98513-98357 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tactcccttcgttccaaattataag 37
|||||||||||||||||||||||||
Sbjct: 5 tactcccttcgttccaaattataag 29
>RF00906;MIR1122;ABXC01001510.1/32715-32871 4558:Sorghum bicolor
(sorghum)
Length = 157
Score = 48.1 bits (24), Expect = 7e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 11 actactcccttcgttccaaattataagacatt 42
|||||||||| || ||||||||||||||||||
Sbjct: 3 actactccctccggtccaaattataagacatt 34
>RF00906;MIR1122;ABXC01001527.1/885-965 4558:Sorghum bicolor
(sorghum)
Length = 81
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 12 ctactcccttcgttccaaattataagacatt 42
||||||||| |||||||||||||||| ||||
Sbjct: 4 ctactccctccgttccaaattataagtcatt 34
>RF00906;MIR1122;ABXC01006511.1/264469-264340 4558:Sorghum bicolor
(sorghum)
Length = 130
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 272 ttataatttggaatgtagggagtactt 298
||||||||||||||| |||||||||||
Sbjct: 28 ttataatttggaatggagggagtactt 2
>RF00906;MIR1122;ABXC01002915.1/67233-67385 4558:Sorghum bicolor
(sorghum)
Length = 153
Score = 46.1 bits (23), Expect = 3e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 12 ctactcccttcgttccaaattataagacatt 42
||||||||| | |||||||||||||||||||
Sbjct: 150 ctactccctccattccaaattataagacatt 120
