miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>54916_zma-miR156f:pmrd
Length = 167
Score = 73.8 bits (37), Expect = 3e-14
Identities = 46/49 (93%)
Strand = Plus / Minus
Query: 11 agctgacagagagagaagtgagcacgcaacagcagctgcatctaggcct 59
|||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 153 agctgacagaaagagaagtgagcacgcaacagcagctgcgcctaggcct 105
Score = 67.9 bits (34), Expect = 2e-12
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 92 agatacagtctggccgctgcatgctcactctcttctgtcagccaca 137
|||| ||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 60 agatgcagtctggccgatgcgtgctcactctcttctgtcagccaca 15
>54911_zma-miR156a:pmrd
Length = 152
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 13 ctgacagagagagaagtgagcacgcaacagcagctgcatc 52
|||||||||||||||||||||||||| |||||||||||||
Sbjct: 134 ctgacagagagagaagtgagcacgcagcagcagctgcatc 95
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 97 cagtctggccgctgcatgctcactctcttctgtcag 132
||||||| |||||| ||||||||||||||||||||
Sbjct: 52 cagtctgcccgctgtgtgctcactctcttctgtcag 17
>54401_sbi-miR156i:pmrd
Length = 121
Score = 71.9 bits (36), Expect = 1e-13
Identities = 39/40 (97%)
Strand = Plus / Minus
Query: 13 ctgacagagagagaagtgagcacgcaacagcagctgcatc 52
|||||||||||||||||||||||||| |||||||||||||
Sbjct: 120 ctgacagagagagaagtgagcacgcagcagcagctgcatc 81
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 97 cagtctggccgctgcatgctcactctcttctgtcag 132
||||||| |||||| ||||||||||||||||||||
Sbjct: 37 cagtctgcccgctgtgtgctcactctcttctgtcag 2
>54398_sbi-miR156f:pmrd
Length = 128
Score = 71.9 bits (36), Expect = 1e-13
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 11 agctgacagagagagaagtgagcacgcaacagcagctgcatctaggcctgcatccatcca 70
|||||||||| |||||||||||||||||||||||||||| |||| | | ||||||||||
Sbjct: 127 agctgacagaaagagaagtgagcacgcaacagcagctgcgcctagacatccatccatcca 68
Score = 60.0 bits (30), Expect = 5e-10
Identities = 39/42 (92%)
Strand = Plus / Minus
Query: 92 agatacagtctggccgctgcatgctcactctcttctgtcagc 133
|||| ||||||||||| ||| |||||||||||||||||||||
Sbjct: 42 agatgcagtctggccgatgcgtgctcactctcttctgtcagc 1
>54917_zma-miR156g:pmrd
Length = 121
Score = 69.9 bits (35), Expect = 5e-13
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 11 agctgacagagagagaagtgagcacgcaacagcagctgc 49
|||||||||| ||||||||||||||||||||||||||||
Sbjct: 121 agctgacagaaagagaagtgagcacgcaacagcagctgc 83
Score = 61.9 bits (31), Expect = 1e-10
Identities = 40/43 (93%)
Strand = Plus / Minus
Query: 92 agatacagtctggccgctgcatgctcactctcttctgtcagcc 134
|||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct: 43 agatgcagtctggccgatgcgtgctcactctcttctgtcagcc 1
>48807_osa-miR156g:pmrd
Length = 116
Score = 60.0 bits (30), Expect = 5e-10
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 89 ttcagatacagtctggccgctgcatgctcactctcttctgtcagcc 134
||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct: 46 ttcagatgcagtctgcccgctgtgtgctcactctcttctgtcagcc 1
Score = 60.0 bits (30), Expect = 5e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 11 agctgacagagagagaagtgagcacgcaac 40
||||||||||||||||||||||||||||||
Sbjct: 116 agctgacagagagagaagtgagcacgcaac 87
>48806_osa-miR156f:pmrd
Length = 186
Score = 54.0 bits (27), Expect = 3e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 97 cagtctggccgctgcatgctcactctcttctgtca 131
|||||||||||||| |||||||||||||||||||
Sbjct: 38 cagtctggccgctgtgtgctcactctcttctgtca 4
Score = 52.0 bits (26), Expect = 1e-07
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 11 agctgacagagagagaagtgagcacgcaacagcagctg 48
|||||||||| ||||||||||||||||| | |||||||
Sbjct: 186 agctgacagaaagagaagtgagcacgcagcggcagctg 149
>54927_zma-miR156r:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 14 tgacagagagagaagtgagcacgca 38
|||||||||||||||||||||||||
Sbjct: 99 tgacagagagagaagtgagcacgca 75
>54924_zma-miR156o:pmrd
Length = 99
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 14 tgacagagagagaagtgagcacgca 38
|||||||||||||||||||||||||
Sbjct: 99 tgacagagagagaagtgagcacgca 75
>54395_sbi-miR156c:pmrd
Length = 95
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 14 tgacagagagagaagtgagcacgca 38
|||||||||||||||||||||||||
Sbjct: 95 tgacagagagagaagtgagcacgca 71
>49326_osa-miRf10111-akr:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 14 tgacagagagagaagtgagcacgc 37
||||||||||||||||||||||||
Sbjct: 95 tgacagagagagaagtgagcacgc 72
>48803_osa-miR156c:pmrd
Length = 149
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 12 gctgacagagagagaagtgagcac 35
||||||||||||||||||||||||
Sbjct: 121 gctgacagagagagaagtgagcac 98
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcagcc 134
||||||||||||||||||||||
Sbjct: 47 tgctcactctcttctgtcagcc 26
>48801_osa-miR156a:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 14 tgacagagagagaagtgagcacgc 37
||||||||||||||||||||||||
Sbjct: 95 tgacagagagagaagtgagcacgc 72
>48652_hvv-miR156a:pmrd
Length = 394
Score = 48.1 bits (24), Expect = 2e-06
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Minus
Query: 15 gacagagagagaagtgagcacgcaacagcagctgcatcta 54
||||||||||| |||||||||||||||||||||| ||||
Sbjct: 393 gacagagagagg-gtgagcacgcaacagcagctgcgtcta 355
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 104 gccgctgcatgctcactctcttctgtca 131
||||||| |||||||||||||||||||
Sbjct: 28 gccgctgtgtgctcactctcttctgtca 1
>48528_gma-miR156a:pmrd
Length = 122
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 11 agctgacagagagagaagtgagcacgca 38
|||||||||| |||||||||||||||||
Sbjct: 106 agctgacagatagagaagtgagcacgca 79
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcagcc 134
||||||||||||||||||||||
Sbjct: 39 tgctcactctcttctgtcagcc 18
>54913_zma-miR156c:pmrd
Length = 139
Score = 46.1 bits (23), Expect = 7e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 12 gctgacagagagagaagtgagcacgca 38
||||||| |||||||||||||||||||
Sbjct: 121 gctgacaaagagagaagtgagcacgca 95
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcagc 133
|||||||||||||||||||||
Sbjct: 39 tgctcactctcttctgtcagc 19
>51354_ppr-miR156:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 ctgacagagagagaagtgagcac 35
|||||||||||||||||||||||
Sbjct: 103 ctgacagagagagaagtgagcac 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcag 132
||||||||||||||||||||
Sbjct: 20 tgctcactctcttctgtcag 1
>48795_oru-miR156:pmrd
Length = 93
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 ctgacagagagagaagtgagcac 35
|||||||||||||||||||||||
Sbjct: 93 ctgacagagagagaagtgagcac 71
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcag 132
||||||||||||||||||||
Sbjct: 20 tgctcactctcttctgtcag 1
>54914_zma-miR156d:pmrd
Length = 119
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 12 gctgacagagagagaagtgagcacgc 37
||||||||| ||||||||||||||||
Sbjct: 101 gctgacagaaagagaagtgagcacgc 76
>54767_vvi-miR156b:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 11 agctgacagagagagaagtgagcacgcaacagca 44
|||||||||| |||||| ||||||||||| ||||
Sbjct: 93 agctgacagaaagagaaatgagcacgcaaaagca 60
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcag 132
||||||||||||||||||||
Sbjct: 29 tgctcactctcttctgtcag 10
>51593_ptc-miR156c:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 11 agctgacagagagagaagtgagcacgcaacagca 44
|||||||||| ||||||||||||||||| ||||
Sbjct: 95 agctgacagaatgagaagtgagcacgcaaaagca 62
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcag 132
||||||||||||||||||||
Sbjct: 29 tgctcactctcttctgtcag 10
>54923_zma-miR156n:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 14 tgacagagagagaagtgagcacgc 37
||||||| ||||||||||||||||
Sbjct: 84 tgacagaaagagaagtgagcacgc 61
>54915_zma-miR156e:pmrd
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 14 tgacagagagagaagtgagcacgc 37
|||||||||||| |||||||||||
Sbjct: 106 tgacagagagagcagtgagcacgc 83
>54769_vvi-miR156d:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcag 132
||||||||||||||||||||
Sbjct: 29 tgctcactctcttctgtcag 10
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 11 agctgacagagagagaagtgagcacgca 38
|||||||||| ||||| |||||||||||
Sbjct: 94 agctgacagaaagagaggtgagcacgca 67
>54393_sbi-miR156a:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 14 tgacagagagagaagtgagcacgc 37
||||||| ||||||||||||||||
Sbjct: 84 tgacagaaagagaagtgagcacgc 61
>51926_ptc-miRf10104-akr:pmrd
Length = 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcag 132
||||||||||||||||||||
Sbjct: 26 tgctcactctcttctgtcag 7
>51596_ptc-miR156f:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcag 132
||||||||||||||||||||
Sbjct: 29 tgctcactctcttctgtcag 10
>51591_ptc-miR156a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcag 132
||||||||||||||||||||
Sbjct: 29 tgctcactctcttctgtcag 10
>49442_osa-miRf10227-akr:pmrd
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 113 tgctcactctcttctgtcag 132
||||||||||||||||||||
Sbjct: 71 tgctcactctcttctgtcag 90
>48815_osa-miR156o:pmrd
Length = 179
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 112 atgctcactctcttctgtca 131
||||||||||||||||||||
Sbjct: 179 atgctcactctcttctgtca 160
>48812_osa-miR156l:pmrd
Length = 156
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 12 gctgacagagagagaagtgagcac 35
||||||||| ||||||||||||||
Sbjct: 148 gctgacagaaagagaagtgagcac 125
>48802_osa-miR156b:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcag 132
||||||||||||||||||||
Sbjct: 61 tgctcactctcttctgtcag 42
>48425_cpt-miR156a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcag 132
||||||||||||||||||||
Sbjct: 29 tgctcactctcttctgtcag 10
>48243_ath-miRf11143-akr:pmrd
Length = 102
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 113 tgctcactctcttctgtcag 132
||||||||||||||||||||
Sbjct: 72 tgctcactctcttctgtcag 91
>46912_ath-miR156c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcag 132
||||||||||||||||||||
Sbjct: 30 tgctcactctcttctgtcag 11
>46911_ath-miR156b:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcag 132
||||||||||||||||||||
Sbjct: 65 tgctcactctcttctgtcag 46
>46910_ath-miR156a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 113 tgctcactctcttctgtcag 132
||||||||||||||||||||
Sbjct: 39 tgctcactctcttctgtcag 20
