miRNEST 2.0, an integrative microRNA resource :: BLAST
>54648_sof-miR408c:pmrd
Length = 286
Score = 85.7 bits (43), Expect = 1e-17
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatggggccatcaac 48
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatggggccatcaac 58
Score = 85.7 bits (43), Expect = 1e-17
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 141 ctggtgttgttgctccctcccctgcactgcctcttccctggctcccc 187
|||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 226 ctggtgttgttgcttcctcccctgcactgcctcttccctggctcccc 272
>54647_sof-miR408b:pmrd
Length = 286
Score = 85.7 bits (43), Expect = 1e-17
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatggggccatcaac 48
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatggggccatcaac 58
Score = 85.7 bits (43), Expect = 1e-17
Identities = 46/47 (97%)
Strand = Plus / Plus
Query: 141 ctggtgttgttgctccctcccctgcactgcctcttccctggctcccc 187
|||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 226 ctggtgttgttgcttcctcccctgcactgcctcttccctggctcccc 272
>48975_osa-miR408:pmrd
Length = 213
Score = 85.7 bits (43), Expect = 1e-17
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 145 tgttgttgctccctcccctgcactgcctcttccctggctcccc 187
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcccc 178
Score = 73.8 bits (37), Expect = 4e-14
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 8 ggagacagggatgaggcagagcatgggatggggccatcaac 48
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 26 ggagacagggatgaggcagagcatgggatggggctatcaac 66
>55104_zma-miR408:pmrd
Length = 191
Score = 83.8 bits (42), Expect = 4e-17
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 144 gtgttgttgctccctcccctgcactgcctcttccctggctcc 185
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gtgttgttgctccctcccctgcactgcctcttccctggctcc 175
Score = 77.8 bits (39), Expect = 3e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatggggccatcaac 48
||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgagacagagcatgggatggggccatcaac 58
>54649_sof-miR408d:pmrd
Length = 215
Score = 81.8 bits (41), Expect = 2e-16
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 4 gattggagacagggatgaggcagagcatgggatggggccatcaac 48
||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 14 gattggagacagggacgaggcagagcatgggatggggccatcaac 58
Score = 77.8 bits (39), Expect = 3e-15
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 141 ctggtgttgttgctccctcccctgcactgcctcttccctggctcccc 187
|||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 155 ctggtgttgttgcttccacccctgcactgcctcttccctggctcccc 201
>54650_sof-miR408e:pmrd
Length = 283
Score = 77.8 bits (39), Expect = 3e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatggggccatcaac 48
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaac 58
Score = 54.0 bits (27), Expect = 4e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 145 tgttgttgctccctcccctgcactgcctcttccctggctcccc 187
|||||||||| || |||||||||| |||||||||||||||||
Sbjct: 227 tgttgttgcttacttccctgcactgactcttccctggctcccc 269
>54646_sof-miR408a:pmrd
Length = 283
Score = 77.8 bits (39), Expect = 3e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatggggccatcaac 48
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaac 58
Score = 77.8 bits (39), Expect = 3e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 145 tgttgttgctccctcccctgcactgcctcttccctggctcccc 187
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 227 tgttgttgcttcctcccctgcactgcctcttccctggctcccc 269
>54499_sbi-miR408:pmrd
Length = 205
Score = 77.8 bits (39), Expect = 3e-15
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 141 ctggtgttgttgctccctcccctgcactgcctcttccctggct 183
|||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 163 ctggtgttgttgcttcctcccctgcactgcctcttccctggct 205
Score = 65.9 bits (33), Expect = 1e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 12 acagggatgaggcagagcatgggatggggccatcaac 48
||||||| |||||||||||||||||||||||||||||
Sbjct: 1 acagggacgaggcagagcatgggatggggccatcaac 37
>54690_tae-miR408:pmrd
Length = 187
Score = 69.9 bits (35), Expect = 7e-13
Identities = 42/43 (97%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 145 tgttgttgctccctcccctgcactgcctcttccctggctcccc 187
||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 120 tgttgttgctccctccc-tgcactgcctcttccctggctcccc 161
>54389_rco-miR408:pmrd
Length = 129
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 159 cccctgcactgcctcttccctggct 183
|||||||||||||||||||||||||
Sbjct: 87 cccctgcactgcctcttccctggct 111
>48428_cpt-miR408:pmrd
Length = 100
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 156 cctcccctgcactgcctcttccctggctc 184
|||||| ||||||||||||||||||||||
Sbjct: 64 cctcccatgcactgcctcttccctggctc 92
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 163 tgcactgcctcttccctggctccc 186
||||||||||||||||||||||||
Sbjct: 25 tgcactgcctcttccctggctccc 2
>47031_ath-miR408:pmrd
Length = 218
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 163 tgcactgcctcttccctggctccc 186
||||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctccc 144
>54892_vvi-miR408:pmrd
Length = 107
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 163 tgcactgcctcttccctggctc 184
||||||||||||||||||||||
Sbjct: 78 tgcactgcctcttccctggctc 99
>51566_pta-miR408:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 163 tgcactgcctcttccctggctc 184
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 tgcactgcctcttccctggct 183
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51762_ptc-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 tgcactgcctcttccctggct 183
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>51397_ppt-miR408b:pmrd
Length = 144
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 tgcactgcctcttccctggct 183
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
>51347_ppe-miR408:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 163 tgcactgcctcttccctggct 183
|||||||||||||||||||||
Sbjct: 76 tgcactgcctcttccctggct 96
>46892_aqc-miR408:pmrd
Length = 87
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 163 tgcactgcctcttccctggct 183
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 10 agacagggatgaggcagagcatgg 33
||||| ||||||||||||||||||
Sbjct: 85 agacaaggatgaggcagagcatgg 62
