miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AP008207.1/12284551-12284732 39947:Oryza sativa
Japonica Group
Length = 182
Score = 85.7 bits (43), Expect = 2e-16
Identities = 43/43 (100%)
Strand = Plus / Plus
Query: 145 tgttgttgctccctcccctgcactgcctcttccctggctcccc 187
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tgttgttgctccctcccctgcactgcctcttccctggctcccc 167
Score = 73.8 bits (37), Expect = 8e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 8 ggagacagggatgaggcagagcatgggatggggccatcaac 48
|||||||||||||||||||||||||||||||||| ||||||
Sbjct: 15 ggagacagggatgaggcagagcatgggatggggctatcaac 55
>RF00690;MIR408;EU976649.1/72-263 4577:Zea mays
Length = 192
Score = 83.8 bits (42), Expect = 8e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 144 gtgttgttgctccctcccctgcactgcctcttccctggctcc 185
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 gtgttgttgctccctcccctgcactgcctcttccctggctcc 176
Score = 69.9 bits (35), Expect = 1e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatggggccatcaac 48
||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 14 ttggagacagggatgagacagagaatgggatggggccatcaac 56
>RF00690;MIR408;EU972352.1/61-243 4577:Zea mays
Length = 183
Score = 83.8 bits (42), Expect = 8e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 144 gtgttgttgctccctcccctgcactgcctcttccctggctcc 185
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gtgttgttgctccctcccctgcactgcctcttccctggctcc 167
Score = 77.8 bits (39), Expect = 5e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 6 ttggagacagggatgaggcagagcatgggatggggccatcaac 48
|||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 14 ttggagacagggatgaggcagagcatgggatggggctatcaac 56
>RF00690;MIR408;EU947091.1/49-229 4577:Zea mays
Length = 181
Score = 79.8 bits (40), Expect = 1e-14
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 146 gttgttgctccctcccctgcactgcctcttccctggctcc 185
||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 gttgttgctccctcccctgcactgcctcttccctggctcc 165
Score = 52.0 bits (26), Expect = 3e-06
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 8 ggagacagggatgaggcagagcatggg-atggggccatcaac 48
||||||||||| ||||||||||||||| | ||||||||||||
Sbjct: 15 ggagacagggacgaggcagagcatgggtagggggccatcaac 56
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 52.0 bits (26), Expect = 3e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 159 cccctgcactgcctcttccctggctc 184
||||||||||||||||||||||||||
Sbjct: 82 cccctgcactgcctcttccctggctc 107
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 159 cccctgcactgcctcttccctggct 183
|||||||||||||||||||||||||
Sbjct: 78 cccctgcactgcctcttccctggct 102
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 163 tgcactgcctcttccctggctccc 186
||||||||||||||||||||||||
Sbjct: 88 tgcactgcctcttccctggctccc 111
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 163 tgcactgcctcttccctggctc 184
||||||||||||||||||||||
Sbjct: 119 tgcactgcctcttccctggctc 140
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 163 tgcactgcctcttccctggctc 184
||||||||||||||||||||||
Sbjct: 88 tgcactgcctcttccctggctc 109
