miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;ABXC01002969.1/79278-79187 4558:Sorghum bicolor
(sorghum)
Length = 92
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 144 tcgcagcacgtgcgctccttctccatcatgg 174
||||||||||||||||||||||||| |||||
Sbjct: 58 tcgcagcacgtgcgctccttctccaacatgg 88
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 78 tgctggagaagcagggcacgtgct 101
||||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgct 31
>RF00647;MIR164;AASG02000423.1/48609-48498 3988:Ricinus communis
(castor bean)
Length = 112
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 76 cctgctggagaagcagggcacgtgc 100
|||||||||||||||||||||||||
Sbjct: 6 cctgctggagaagcagggcacgtgc 30
>RF00647;MIR164;AP004257.3/77813-77720 39947:Oryza sativa Japonica
Group
Length = 94
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 78 tgctggagaagcagggcacgtgct 101
||||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgct 31
>RF00647;MIR164;AC189657.2/5377-5278 51351:Brassica rapa subsp.
pekinensis
Length = 100
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tgctggagaagcagggcacgtgc 100
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;AC189579.2/50985-50886 51351:Brassica rapa subsp.
pekinensis
Length = 100
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tgctggagaagcagggcacgtgc 100
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;AARH01005550.1/339945-339862 3694:Populus
trichocarpa
Length = 84
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tgctggagaagcagggcacgtgc 100
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;AASG02000861.1/36470-36555 3988:Ricinus communis
(castor bean)
Length = 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tgctggagaagcagggcacgtgc 100
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;FM162585.1/105-191 3451:Aquilegia vulgaris
Length = 87
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tgctggagaagcagggcacgtgc 100
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;FM162584.1/200-286 3451:Aquilegia vulgaris
Length = 87
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tgctggagaagcagggcacgtgc 100
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;FM162588.1/798-884 310672:Cabomba aquatica
Length = 87
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 78 tgctggagaagcagggcacgtgc 100
|||||||||||||||||||||||
Sbjct: 8 tgctggagaagcagggcacgtgc 30
>RF00647;MIR164;ABIM01003254.1/2406-2491 3649:Carica papaya (papaya)
Length = 86
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 75 ccctgctggagaagcagggcacgtgc 100
||||| ||||||||||||||||||||
Sbjct: 5 ccctgttggagaagcagggcacgtgc 30
>RF00647;MIR164;AY871042.1/1-85 3694:Populus trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 gctggagaagcagggcacgtgc 100
||||||||||||||||||||||
Sbjct: 1 gctggagaagcagggcacgtgc 22
>RF00647;MIR164;AY728400.1/2-73 3694:Populus trichocarpa
Length = 72
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 gctggagaagcagggcacgtgc 100
||||||||||||||||||||||
Sbjct: 1 gctggagaagcagggcacgtgc 22
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 79 gctggagaagcagggcacgtgc 100
||||||||||||||||||||||
Sbjct: 9 gctggagaagcagggcacgtgc 30
>RF00647;MIR164;ABXC01006134.1/23615-23833 4558:Sorghum bicolor
(sorghum)
Length = 219
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 75 ccctgctggagaagcagggcacgtgc 100
||||| ||||||||||||||||||||
Sbjct: 5 ccctgttggagaagcagggcacgtgc 30
