miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AACV01007836.1/7963-7867 39947:Oryza sativa
Japonica Group
Length = 97
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 atctactccctccgtccctaaata 33
||||||||||||||||||||||||
Sbjct: 96 atctactccctccgtccctaaata 73
>RF00906;MIR1122;AACV01017146.1/25916-25760 39947:Oryza sativa
Japonica Group
Length = 157
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 atctactccctccgtccctaaata 33
||||||||||||||||||||||||
Sbjct: 156 atctactccctccgtccctaaata 133
>RF01058;MIR806;CR855092.1/95501-95738 4530:Oryza sativa (rice)
Length = 238
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 13 tactccctccgtccctaaataac 35
|||||||||||||||||||||||
Sbjct: 2 tactccctccgtccctaaataac 24
>RF00906;MIR1122;AF488415.1/78603-78755 4568:Triticum monococcum
Length = 153
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgtccctaaataactgtc 39
||||||||||||||| |||||||||||
Sbjct: 149 tactccctccgtcccaaaataactgtc 123
>RF00906;MIR1122;AK249560.1/988-1092 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgtccctaaataactgtc 39
||||||||||||||| |||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtc 75
>RF00906;MIR1122;EU282770.1/593-711 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 119
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgtccctaaataactgtc 39
||||||||||||||| |||||||||||
Sbjct: 115 tactccctccgtcccaaaataactgtc 89
>RF00906;MIR1122;AY133251.1/901-1005 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgtccctaaataactgtc 39
||||||||||||||| |||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtc 75
>RF00906;MIR1122;DQ445238.1/5626-5730 112509:Hordeum vulgare
subsp. vulgare (domesticated barley)
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgtccctaaataactgtc 39
||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtcccaaaataactgtc 31
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgtccctaaataactgtc 39
||||||||||||||| |||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtc 75
>RF00906;MIR1122;EU593539.1/914-1018 4513:Hordeum vulgare
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tactccctccgtccctaaataactgtc 39
||||||||||||||| |||||||||||
Sbjct: 5 tactccctccgtcccaaaataactgtc 31
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 13 tactccctccgtccctaaataactgtc 39
||||||||||||||| |||||||||||
Sbjct: 101 tactccctccgtcccaaaataactgtc 75
>RF00906;MIR1122;AAAA02006463.1/56610-56765 39946:Oryza sativa
Indica Group
Length = 156
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tctactccctccgtccctaaata 33
|||||||||||||||||||||||
Sbjct: 3 tctactccctccgtccctaaata 25
>RF00906;MIR1122;AACV01005168.1/9233-9388 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tctactccctccgtccctaaata 33
|||||||||||||||||||||||
Sbjct: 3 tctactccctccgtccctaaata 25
>RF00906;MIR1122;AP004178.3/74526-74681 39947:Oryza sativa
Japonica Group
Length = 156
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tctactccctccgtccctaaata 33
|||||||||||||||||||||||
Sbjct: 3 tctactccctccgtccctaaata 25
>RF01058;MIR806;AAAA02017693.1/1498-1741 39946:Oryza sativa Indica
Group
Length = 244
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 227 cacttaaaaagggacagagggagtag 252
||||||||||||||| ||||||||||
Sbjct: 219 cacttaaaaagggacggagggagtag 244
>RF01058;MIR806;AAAA02004732.1/1025-786 39946:Oryza sativa Indica
Group
Length = 240
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 1 ctactccctccgtccctaaata 22
>RF01058;MIR806;AAAA02029671.1/2843-3067 39946:Oryza sativa Indica
Group
Length = 225
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 1 ctactccctccgtccctaaata 22
>RF01058;MIR806;AAAA02009166.1/12809-12572 39946:Oryza sativa Indica
Group
Length = 238
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 238 ctactccctccgtccctaaata 217
>RF01058;MIR806;AACV01018714.1/67447-67209 39947:Oryza sativa
Japonica Group
Length = 239
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 239 ctactccctccgtccctaaata 218
>RF01058;MIR806;AACV01003404.1/46592-46354 39947:Oryza sativa
Japonica Group
Length = 239
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 1 ctactccctccgtccctaaata 22
>RF00906;MIR1122;EU282251.1/1314-1209 52152:Elymus repens
Length = 106
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 ctactccctccgtccctaaataactgtcgc 41
|||||||||||||||| |||||| ||||||
Sbjct: 4 ctactccctccgtcccaaaataagtgtcgc 33
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 13 tactccctccgtccctaaataactgtcgct 42
||||||||||||||| |||||| |||||||
Sbjct: 102 tactccctccgtcccaaaataagtgtcgct 73
>RF00906;MIR1122;AAAA02000966.1/612-453 39946:Oryza sativa Indica
Group
Length = 160
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 tctactccctccgtccctaaataact 36
||||||||||||||||| ||||||||
Sbjct: 158 tctactccctccgtcccaaaataact 133
>RF00906;MIR1122;AC135958.2/60124-60233 39947:Oryza sativa Japonica
Group
Length = 110
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 107 ctactccctccgtccctaaata 86
>RF00906;MIR1122;AC092779.5/114881-115036 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 153 ctactccctccgtccctaaata 132
>RF00906;MIR1122;AAAA02028211.1/1243-1359 39946:Oryza sativa
Indica Group
Length = 117
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 4 ctactccctccgtccctaaata 25
>RF00906;MIR1122;AK288631.1/1276-1390 39947:Oryza sativa Japonica
Group
Length = 115
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 112 ctactccctccgtccctaaata 91
>RF00906;MIR1122;AC136448.2/118247-118097 39947:Oryza sativa
Japonica Group
Length = 151
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 4 ctactccctccgtccctaaata 25
>RF00906;MIR1122;AACV01023423.1/18495-18379 39947:Oryza sativa
Japonica Group
Length = 117
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 4 ctactccctccgtccctaaata 25
>RF00906;MIR1122;AP004994.2/69469-69314 39947:Oryza sativa
Japonica Group
Length = 156
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 4 ctactccctccgtccctaaata 25
>RF00906;MIR1122;AC120985.3/48011-47950 39947:Oryza sativa
Japonica Group
Length = 62
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 59 ctactccctccgtccctaaata 38
>RF00906;MIR1122;AAAA02018670.1/1486-1331 39946:Oryza sativa
Indica Group
Length = 156
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 4 ctactccctccgtccctaaata 25
>RF00906;MIR1122;AAAA02019543.1/35421-35577 39946:Oryza sativa
Indica Group
Length = 157
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 154 ctactccctccgtccctaaata 133
>RF00906;MIR1122;AAAA02021208.1/38295-38158 39946:Oryza sativa
Indica Group
Length = 138
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 tactccctccgtccctaaataa 34
||||||||||||||||||||||
Sbjct: 134 tactccctccgtccctaaataa 113
>RF00906;MIR1122;AACV01012007.1/47065-46909 39947:Oryza sativa
Japonica Group
Length = 157
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 4 ctactccctccgtccctaaata 25
>RF00906;MIR1122;AP004736.2/17089-17220 39947:Oryza sativa Japonica
Group
Length = 132
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ctactccctccgtccctaaata 33
||||||||||||||||||||||
Sbjct: 129 ctactccctccgtccctaaata 108
