miRNEST 2.0, an integrative microRNA resource :: BLAST
>41636_vvi-MIR319c:mirbase
Length = 182
Score = 107 bits (54), Expect = 3e-24
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 108 agtaaatgattgaatgatgcgggagacaaattggatcttaagtgtcctgtatttggactg 167
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 99 agtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggactg 158
Query: 168 aagggagctccctt 181
||||||||||||||
Sbjct: 159 aagggagctccctt 172
>40367_rco-MIR319a:mirbase
Length = 211
Score = 107 bits (54), Expect = 3e-24
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 108 agtaaatgattgaatgatgcgggagacaaattggatcttaagtgtcctgtatttggactg 167
||||||||| ||||||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct: 134 agtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggactg 193
Query: 168 aagggagctccctt 181
||||||||||||||
Sbjct: 194 aagggagctccctt 207
Score = 69.9 bits (35), Expect = 7e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 8 aagagagctttcttcggtccactcacgggttacgataagatatcaattagctgccgactc 67
||||||||||||||| ||||||||| |||| || || ||| | ||||||||||||||||
Sbjct: 3 aagagagctttcttcagtccactcatgggtggcggtaggattt-aattagctgccgactc 61
Query: 68 attcacccaaatact 82
||||| |||||||||
Sbjct: 62 attcatccaaatact 76
>40464_gma-MIR319a:mirbase
Length = 207
Score = 105 bits (53), Expect = 1e-23
Identities = 65/69 (94%)
Strand = Plus / Plus
Query: 113 atgattgaatgatgcgggagacaaattggatcttaagtgtcctgtatttggactgaaggg 172
|||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||
Sbjct: 122 atgagtgaatgatgcgggagacaaattgaatcttaagtttcctgtacttggactgaaggg 181
Query: 173 agctccctt 181
|||||||||
Sbjct: 182 agctccctt 190
>40465_gma-MIR319b:mirbase
Length = 208
Score = 103 bits (52), Expect = 5e-23
Identities = 146/175 (83%), Gaps = 3/175 (1%)
Strand = Plus / Plus
Query: 8 aagagagctttcttcggtccactcacgggttacgataagatatcaattagctgccgactc 67
||||||||||||||| ||||||| | |||| || ||||||| ||||||||||||||||||
Sbjct: 19 aagagagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactc 78
Query: 68 attcacccaaatactaggccaaaatctgtttatag-tgcttagtaaatgattgaatgatg 126
||||| |||||| || | ||| | | || | || || |||||| |||||||||
Sbjct: 79 attcatccaaatgctgagtgaaagc--gaagaaagatactcagcaaatgagtgaatgatg 136
Query: 127 cgggagacaaattggatcttaagtgtcctgtatttggactgaagggagctccctt 181
|||||||||||||| |||||||| ||||||| ||||||||||||||||||||||
Sbjct: 137 cgggagacaaattgattcttaagtttcctgtacttggactgaagggagctccctt 191
>40704_mtr-MIR319b:mirbase
Length = 180
Score = 101 bits (51), Expect = 2e-22
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 111 aaatgattgaatgatgcgggagacaaattggatcttaagtgtcctgtatttggactgaag 170
|||||| ||||||||||||||||||||||| ||||||||| |||| || |||||||||||
Sbjct: 107 aaatgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaag 166
Query: 171 ggagctccctt 181
|||||||||||
Sbjct: 167 ggagctccctt 177
>41404_ptc-MIR319a:mirbase
Length = 188
Score = 99.6 bits (50), Expect = 7e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 108 agtaaatgattgaatgatgcgggagacaaattggatcttaagtgtcctgtatttggactg 167
||||||||| ||||||||||||||||||||||| ||| |||| ||||||| ||||||||
Sbjct: 108 agtaaatgagtgaatgatgcgggagacaaattgaatcctaagcttcctgtacttggactg 167
Query: 168 aagggagctccctt 181
||||||||||||||
Sbjct: 168 aagggagctccctt 181
>41282_ctr-MIR319:mirbase
Length = 186
Score = 95.6 bits (48), Expect = 1e-20
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 108 agtaaatgattgaatgatgcgggagacaaattggatcttaagtgtcctgtatttggactg 167
||||||||| ||||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct: 105 agtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtgcttggactg 164
Query: 168 aagggagctccc 179
||||||||||||
Sbjct: 165 aagggagctccc 176
>41185_aqc-MIR319:mirbase
Length = 177
Score = 71.9 bits (36), Expect = 2e-13
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 109 gtaaatgattgaatgatgcgggagacaaattggatcttaagtgtcctgtatttggactga 168
|||||||| |||||||| ||||||| |||||||||||| | || |||| |||||||||
Sbjct: 104 gtaaatgaatgaatgatccgggagattaattggatcttatgcttcttgtacttggactga 163
Query: 169 agggagctccct 180
||||||||||||
Sbjct: 164 agggagctccct 175
>41405_ptc-MIR319b:mirbase
Length = 185
Score = 67.9 bits (34), Expect = 3e-12
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 108 agtaaatgattgaatgatgcgggagacaaattggatcttaagtgtcctgtatttggactg 167
||||||||| ||| |||||||||||||||||| ||||||| |||| | ||||||||
Sbjct: 105 agtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggactg 164
Query: 168 aagggagctccctt 181
||||||||||||||
Sbjct: 165 aagggagctccctt 178
>40069_ath-MIR319a:mirbase
Length = 176
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 110 taaatgattgaatgatgcgggagacaaattggatc 144
||||||| |||||||||||| ||||||||||||||
Sbjct: 104 taaatgaatgaatgatgcggtagacaaattggatc 138
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 50 tcaattagctgccgactcattcacccaaatac 81
|||||||||| |||||||||||| ||||||||
Sbjct: 43 tcaattagcttccgactcattcatccaaatac 74
>39858_aly-MIR319a:mirbase
Length = 221
Score = 54.0 bits (27), Expect = 4e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 110 taaatgattgaatgatgcgggagacaaattggatc 144
||||||| |||||||||||| ||||||||||||||
Sbjct: 127 taaatgaatgaatgatgcggtagacaaattggatc 161
Score = 46.1 bits (23), Expect = 9e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 51 caattagctgccgactcattcacccaaatac 81
||||||||| |||||||||||| ||||||||
Sbjct: 67 caattagcttccgactcattcatccaaatac 97
>42781_zma-MIR319b:mirbase
Length = 213
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 aattagctgccgactcattcaccca 76
|||||||||||||||||||||||||
Sbjct: 63 aattagctgccgactcattcaccca 87
>42563_sbi-MIR319:mirbase
Length = 249
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 aattagctgccgactcattcaccca 76
|||||||||||||||||||||||||
Sbjct: 75 aattagctgccgactcattcaccca 99
>41995_osa-MIR319b:mirbase
Length = 197
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 aattagctgccgactcattcaccca 76
|||||||||||||||||||||||||
Sbjct: 53 aattagctgccgactcattcaccca 77
>39859_aly-MIR319b:mirbase
Length = 246
Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 aagagagctttcttcggtccactca 32
|||||||||||||||||||||||||
Sbjct: 39 aagagagctttcttcggtccactca 63
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 109 gtaaatgattgaatgatgcgggagacaaattg 140
|||||||| ||||||||||| |||||||||||
Sbjct: 140 gtaaatgaatgaatgatgcgagagacaaattg 171
>42783_zma-MIR319d:mirbase
Length = 212
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 attagctgccgactcattcaccca 76
||||||||||||||||||||||||
Sbjct: 63 attagctgccgactcattcaccca 86
>40070_ath-MIR319b:mirbase
Length = 172
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 9 agagagctttcttcggtccactca 32
||||||||||||||||||||||||
Sbjct: 1 agagagctttcttcggtccactca 24
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 109 gtaaatgattgaatgatgcgggagacaaattg 140
|||||||| ||||||||||| |||||||||||
Sbjct: 101 gtaaatgaatgaatgatgcgagagacaaattg 132
>41635_vvi-MIR319b:mirbase
Length = 194
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctcccttatatt 186
|||||||||||||||||||||| ||||
Sbjct: 163 ttggactgaagggagctcccttgtatt 189
>41544_sly-MIR319:mirbase
Length = 168
Score = 46.1 bits (23), Expect = 9e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 152 tcctgtatttggactgaagggagctcc 178
||||||| |||||||||||||||||||
Sbjct: 142 tcctgtacttggactgaagggagctcc 168
Score = 44.1 bits (22), Expect = 4e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 50 tcaattagctgccgactcattcacccaaat 79
|||||| |||||||||||||||| ||||||
Sbjct: 37 tcaatttgctgccgactcattcatccaaat 66
>41638_vvi-MIR319f:mirbase
Length = 193
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccctt 181
||||||||||||||||||||||
Sbjct: 162 ttggactgaagggagctccctt 183
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 attagctgccgactcattca 72
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
>41407_ptc-MIR319d:mirbase
Length = 193
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccctt 181
||||||||||||||||||||||
Sbjct: 165 ttggactgaagggagctccctt 186
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 attagctgccgactcattca 72
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
>41406_ptc-MIR319c:mirbase
Length = 196
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccctt 181
||||||||||||||||||||||
Sbjct: 168 ttggactgaagggagctccctt 189
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 8 aagagagctttcttcggtccactca 32
||||||||||||||| |||||||||
Sbjct: 9 aagagagctttcttcagtccactca 33
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 attagctgccgactcattca 72
||||||||||||||||||||
Sbjct: 54 attagctgccgactcattca 73
>40703_mtr-MIR319:mirbase
Length = 207
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccctt 181
||||||||||||||||||||||
Sbjct: 169 ttggactgaagggagctccctt 190
>40369_rco-MIR319c:mirbase
Length = 188
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccctt 181
||||||||||||||||||||||
Sbjct: 163 ttggactgaagggagctccctt 184
>39740_smo-MIR319:mirbase
Length = 215
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccctt 181
||||||||||||||||||||||
Sbjct: 186 ttggactgaagggagctccctt 207
>42642_tae-MIR319:mirbase
Length = 211
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccct 180
|||||||||||||||||||||
Sbjct: 184 ttggactgaagggagctccct 204
>41770_bdi-MIR319:mirbase
Length = 280
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccct 180
|||||||||||||||||||||
Sbjct: 226 ttggactgaagggagctccct 246
>41409_ptc-MIR319f:mirbase
Length = 202
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 aattagctgccgactcattca 72
|||||||||||||||||||||
Sbjct: 55 aattagctgccgactcattca 75
>40368_rco-MIR319b:mirbase
Length = 179
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccct 180
|||||||||||||||||||||
Sbjct: 154 ttggactgaagggagctccct 174
>40071_ath-MIR319c:mirbase
Length = 199
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 154 ctgtatttggactgaagggagctcc 178
|||| ||||||||||||||||||||
Sbjct: 164 ctgtgtttggactgaagggagctcc 188
>39861_aly-MIR319d:mirbase
Length = 267
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 154 ctgtatttggactgaagggagctcc 178
|||| ||||||||||||||||||||
Sbjct: 198 ctgtgtttggactgaagggagctcc 222
>39860_aly-MIR319c:mirbase
Length = 271
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 154 ctgtatttggactgaagggagctcc 178
|||| ||||||||||||||||||||
Sbjct: 198 ctgtgtttggactgaagggagctcc 222
>41639_vvi-MIR319g:mirbase
Length = 222
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccc 179
||||||||||||||||||||
Sbjct: 192 ttggactgaagggagctccc 211
>41637_vvi-MIR319e:mirbase
Length = 107
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggactgaagggagctcc 178
||||||||||||||||||||
Sbjct: 76 tttggactgaagggagctcc 95
>41236_csi-MIR319:mirbase
Length = 123
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggactgaagggagctcc 178
||||||||||||||||||||
Sbjct: 90 tttggactgaagggagctcc 109
>41129_tcc-MIR319:mirbase
Length = 133
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 159 tttggactgaagggagctcc 178
||||||||||||||||||||
Sbjct: 93 tttggactgaagggagctcc 112
>39484_ppt-MIR319e:mirbase
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccc 179
||||||||||||||||||||
Sbjct: 148 ttggactgaagggagctccc 167
>39483_ppt-MIR319d:mirbase
Length = 170
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccc 179
||||||||||||||||||||
Sbjct: 146 ttggactgaagggagctccc 165
>39482_ppt-MIR319c:mirbase
Length = 189
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctccc 179
||||||||||||||||||||
Sbjct: 155 ttggactgaagggagctccc 174
>39419_pta-MIR159c:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 160 ttggactgaagggagctcccttat 183
||||| ||||||||||||||||||
Sbjct: 50 ttggattgaagggagctcccttat 73
