miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 83.8 bits (42), Expect = 5e-16
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 6 tagagcaagatggagaagcagggcacgtgcattactaactca 47
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagagcaagatggagaagcagggcacgtgcattactaactca 42
Score = 60.0 bits (30), Expect = 8e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 86 tgagttagttcttcatgtgcccctcttccccatcatga 123
|||||||||| ||||||||||| |||||||||||||||
Sbjct: 105 tgagttagtttttcatgtgcccatcttccccatcatga 142
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 79.8 bits (40), Expect = 8e-15
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 8 gagcaagatggagaagcagggcacgtgcattactaactca 47
||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagcaagatggagaagcagggcacgtgcattactaactca 42
Score = 67.9 bits (34), Expect = 3e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 86 tgagttagttcttcatgtgcccctcttccccatcatga 123
|||||||||||||||||||||| |||||||||||||||
Sbjct: 74 tgagttagttcttcatgtgcccgtcttccccatcatga 111
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 79.8 bits (40), Expect = 8e-15
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 8 gagcaagatggagaagcagggcacgtgcattactaactca 47
||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagcaagatggagaagcagggcacgtgcattactaactca 42
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 87 gagttagttcttcatgtgcccctcttccccatcatga 123
|||||||||||||||||||| |||||||||||||||
Sbjct: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 79.8 bits (40), Expect = 8e-15
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 8 gagcaagatggagaagcagggcacgtgcattactaactca 47
||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gagcaagatggagaagcagggcacgtgcattactaactca 42
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 89 gttagttcttcatgtgcccctcttccccatcatga 123
||||||||||||||||||| |||||||||||||||
Sbjct: 86 gttagttcttcatgtgcccgtcttccccatcatga 120
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 79.8 bits (40), Expect = 8e-15
Identities = 40/40 (100%)
Strand = Plus / Plus
Query: 84 attgagttagttcttcatgtgcccctcttccccatcatga 123
||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 attgagttagttcttcatgtgcccctcttccccatcatga 149
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 11 caagatggagaagcagggcacgtgcattactaactca 47
|||||||||||||||||||||||||| ||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatactaactca 42
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 8 gagcaagatggagaagcagggcacgtgcattactaactca 47
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3 gagcaagatggagaagcagggcacgtgcattactagctca 42
Score = 60.0 bits (30), Expect = 8e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 86 tgagttagttcttcatgtgcccctcttccccatcatga 123
|||||||||||||||||||||| ||||| |||||||||
Sbjct: 130 tgagttagttcttcatgtgcccatcttcaccatcatga 167
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 8 gagcaagatggagaagcagggcacgtgcattactaactca 47
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3 gagcaagatggagaagcagggcacgtgcattactagctca 42
Score = 60.0 bits (30), Expect = 8e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 86 tgagttagttcttcatgtgcccctcttccccatcatga 123
|||||||||||||||||||||| ||||| |||||||||
Sbjct: 129 tgagttagttcttcatgtgcccatcttcaccatcatga 166
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 8 gagcaagatggagaagcagggcacgtgcattactaactca 47
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3 gagcaagatggagaagcagggcacgtgcattactagctca 42
Score = 60.0 bits (30), Expect = 8e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 86 tgagttagttcttcatgtgcccctcttccccatcatga 123
|||||||||||||||||||||| ||||| |||||||||
Sbjct: 128 tgagttagttcttcatgtgcccatcttcaccatcatga 165
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 71.9 bits (36), Expect = 2e-12
Identities = 39/40 (97%)
Strand = Plus / Plus
Query: 8 gagcaagatggagaagcagggcacgtgcattactaactca 47
||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3 gagcaagatggagaagcagggcacgtgcattactagctca 42
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 87 gagttagttcttcatgtgcccctcttccccatcatga 123
||||| |||||||||||||||||||||||||||||||
Sbjct: 120 gagttggttcttcatgtgcccctcttccccatcatga 156
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 67.9 bits (34), Expect = 3e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 86 tgagttagttcttcatgtgcccctcttccccatcatga 123
||||||||| ||||||||||||||||||||||||||||
Sbjct: 254 tgagttagtgcttcatgtgcccctcttccccatcatga 291
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 11 caagatggagaagcagggcacgtgcattactaactca 47
|||||||||||||||||||||||||| | ||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatgctaactca 42
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 10 gcaagatggagaagcagggcacgtgcattacta 42
|||||||||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattacta 37
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 63.9 bits (32), Expect = 5e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 8 gagcaagatggagaagcagggcacgtgcattactaactca 47
||||||||||||||||||||||||||||| |||||||||
Sbjct: 3 gagcaagatggagaagcagggcacgtgcaacactaactca 42
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 88 agttagttcttcatgtgcccctcttccccatcatga 123
||||||| ||||||||||||||||||||||||||||
Sbjct: 251 agttagtacttcatgtgcccctcttccccatcatga 286
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 10 gcaagatggagaagcagggcacgtgcattact 41
||||||||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattact 36
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 90 ttagttcttcatgtgcccctcttccccatcatga 123
||||||||||||||||||||||| |||||||||
Sbjct: 57 ttagttcttcatgtgcccctcttttccatcatga 90
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 60.0 bits (30), Expect = 8e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 14 gatggagaagcagggcacgtgcattactaactca 47
||||||||||||||||||||||| ||||||||||
Sbjct: 1 gatggagaagcagggcacgtgcactactaactca 34
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 56.0 bits (28), Expect = 1e-07
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 9 agcaagatggagaagcagggcacgtgcattactaactcaccaac 52
|||| ||||||||||||||||||||||| | |||||||| ||||
Sbjct: 4 agcatgatggagaagcagggcacgtgcaatgctaactcatcaac 47
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 97 ttcatgtgcccctcttccccatcatga 123
|||||||||||||||||||||||||||
Sbjct: 69 ttcatgtgcccctcttccccatcatga 95
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 gatggagaagcagggcacgtgcattac 40
|||||||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgcattac 35
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 tggagaagcagggcacgtgcattac 40
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 tggagaagcagggcacgtgcattac 40
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 gatggagaagcagggcacgtgca 36
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
Japonica Group
Length = 180
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tggagaagcagggcacgtgcatt 38
|||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcatt 33
>RF00647;MIR164;EU548763.1/160-261 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 gatggagaagcagggcacgtgc 35
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tggagaagcagggcacgtgcat 37
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tggagaagcagggcacgtgcat 37
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
>RF00647;MIR164;AAAA02022630.1/18106-18247 39946:Oryza sativa
Indica Group
Length = 142
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 16 tggagaagcagggcacgtgcat 37
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcat 32
