miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;BABK01022869.1/1081-990 34305:Lotus japonicus
Length = 92
Score = 123 bits (62), Expect = 6e-28
Identities = 88/94 (93%), Gaps = 2/94 (2%)
Strand = Plus / Plus
Query: 18 caccactaccagttgaagctgccagcatgatcttaacttccctcacttggttgaggagag 77
|||||||||||||||||||||||||||||||||||||||||||| | ||| || ||| ||
Sbjct: 1 caccactaccagttgaagctgccagcatgatcttaacttccctc-catgg-tggggaaag 58
Query: 78 atcagatcatgtggcagtttcacctagttgttgg 111
||||||||||||||||||||||||| ||||||||
Sbjct: 59 atcagatcatgtggcagtttcaccttgttgttgg 92
>RF00640;MIR167_1;AASG02005785.1/15088-15180 3988:Ricinus communis
(castor bean)
Length = 93
Score = 95.6 bits (48), Expect = 1e-19
Identities = 76/84 (90%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 18 caccactaccagttgaagctgccagcatgatcttaacttccctcacttggttgaggagag 77
|||||||| |||||||||||||||||||||||| || | |||| | | |||||||||||
Sbjct: 1 caccactatcagttgaagctgccagcatgatctaaatcttcctc-cctcgttgaggagag 59
Query: 78 atcagatcatgtggcagtttcacc 101
||||||||||||||||||||||||
Sbjct: 60 atcagatcatgtggcagtttcacc 83
>RF00640;MIR167_1;CAAP02000793.1/41456-41548 29760:Vitis vinifera
Length = 93
Score = 91.7 bits (46), Expect = 2e-18
Identities = 84/94 (89%), Gaps = 2/94 (2%)
Strand = Plus / Plus
Query: 18 caccactaccagttgaagctgccagcatgatcttaacttccctcacttggttgaggagag 77
|||||||| |||||||||||||||||||||||| ||||| | || ||| | ||| ||||
Sbjct: 1 caccactatcagttgaagctgccagcatgatctaaacttgcttccctttg-tgaacagag 59
Query: 78 atcagatcatgtggcagtttcacctagttgttgg 111
||||||||||||||||||||||||| ||||||||
Sbjct: 60 atcagatcatgtggcagtttcacct-gttgttgg 92
>RF00640;MIR167_1;AARH01004314.1/38692-38599 3694:Populus
trichocarpa
Length = 94
Score = 77.8 bits (39), Expect = 3e-14
Identities = 84/95 (88%), Gaps = 3/95 (3%)
Strand = Plus / Plus
Query: 18 caccactaccagttgaagctgccagcatgatcttaacttccctcacttggttgaggagag 77
|||| ||| |||||||||||||||||||||||||| | | |||| ||| |||||||| ||
Sbjct: 1 cacctctatcagttgaagctgccagcatgatcttagccttcctc-ctttgttgaggaaag 59
Query: 78 -atcagatcatgtggcagtttcacctagttgttgg 111
| ||||||||||||||||||||||| ||||||||
Sbjct: 60 aaacagatcatgtggcagtttcacct-gttgttgg 93
>RF00640;MIR167_1;CAAP02000379.1/24621-24714 29760:Vitis vinifera
Length = 94
Score = 61.9 bits (31), Expect = 2e-09
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 18 caccactaccagttgaagctgccagcatgatcttaacttccct 60
||||| || |||||||||||||||||||||||| |||||||||
Sbjct: 1 caccagtagcagttgaagctgccagcatgatctcaacttccct 43
>RF00640;MIR167_1;AC225328.1/13792-13888 4081:Solanum lycopersicum
Length = 97
Score = 60.0 bits (30), Expect = 8e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 19 accactaccagttgaagctgccagcatgatcttaactt 56
||||||| |||||||||||||||||||||||| |||||
Sbjct: 2 accactagcagttgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AARH01002853.1/45908-46003 3694:Populus
trichocarpa
Length = 96
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 18 caccactaccagttgaagctgccagcatgatct 50
|||||||| ||||||||||||||||||||||||
Sbjct: 1 caccactagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01001059.1/157614-157519 3694:Populus
trichocarpa
Length = 96
Score = 58.0 bits (29), Expect = 3e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 18 caccactaccagttgaagctgccagcatgatct 50
|||||||| ||||||||||||||||||||||||
Sbjct: 1 caccactagcagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU532400.1/147-239 3634:Gossypium barbadense
(sea-island cotton)
Length = 93
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 27 cagttgaagctgccagcatgatcttaacttcc 58
|||||||||||||||||||||||| |||||||
Sbjct: 10 cagttgaagctgccagcatgatctaaacttcc 41
>RF00640;MIR167_1;AC209507.1/126147-126250 4081:Solanum
lycopersicum
Length = 104
Score = 56.0 bits (28), Expect = 1e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 21 cactaccagttgaagctgccagcatgatcttaactt 56
||||| |||||||||||||||||||||||| |||||
Sbjct: 4 cactagcagttgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;ABIM01012099.1/6617-6710 3649:Carica papaya
(papaya)
Length = 94
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 18 caccactaccagttgaagctgccagcatgatcttaactt 56
||||| || |||||||||||||||||||||||| |||||
Sbjct: 1 caccagtagcagttgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 54.0 bits (27), Expect = 5e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 18 caccactaccagttgaagctgccagcatgatcttaactt 56
|||||||| ||||||||||||||||||||||| |||||
Sbjct: 1 caccactagtagttgaagctgccagcatgatctgaactt 39
>RF00640;MIR167_1;AASG02013390.1/4624-4525 3988:Ricinus communis
(castor bean)
Length = 100
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 18 caccactaccagttgaagctgccagcatgatct 50
|||||||| ||||| ||||||||||||||||||
Sbjct: 1 caccactagcagttaaagctgccagcatgatct 33
>RF00640;MIR167_1;CAAP02001791.1/44208-44309 29760:Vitis vinifera
Length = 102
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 18 caccactaccagttgaagctgccagcatgatct 50
||||| || ||||||||||||||||||||||||
Sbjct: 1 caccaatagcagttgaagctgccagcatgatct 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 81 agatcatgtggcagtttcacct 102
||||||||||||||||||||||
Sbjct: 72 agatcatgtggcagtttcacct 93
>RF00640;MIR167_1;ABIM01011014.1/4156-4251 3649:Carica papaya
(papaya)
Length = 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatcttaac 54
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatcttaac 37
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 76 agatcagatcatgtggcagtttcacc 101
|||||||||||| |||||||||||||
Sbjct: 61 agatcagatcatatggcagtttcacc 86
>RF00640;MIR167_1;ABIM01018604.1/478-580 3649:Carica papaya
(papaya)
Length = 103
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 27 cagttgaagctgccagcatgatct 50
||||||||||||||||||||||||
Sbjct: 10 cagttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 71 aggagagatcagatcatgtggcagtttcacct 102
|||||||| ||||||||||||||||||||||
Sbjct: 49 aggagagactagatcatgtggcagtttcacct 80
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 28 agttgaagctgccagcatgatct 50
|||||||||||||||||||||||
Sbjct: 11 agttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 gttgaagctgccagcatgatct 50
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 gttgaagctgccagcatgatct 50
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 gttgaagctgccagcatgatct 50
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;AC225328.1/5014-5119 4081:Solanum lycopersicum
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatcttaactt 56
|||||||||||||||||||| |||||
Sbjct: 14 tgaagctgccagcatgatctaaactt 39
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 gttgaagctgccagcatgatct 50
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 gttgaagctgccagcatgatct 50
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 gttgaagctgccagcatgatct 50
||||||||||||||||||||||
Sbjct: 12 gttgaagctgccagcatgatct 33
