miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39381_pab-MIR396c:mirbase
Length = 143
Score = 232 bits (117), Expect = 5e-62
Identities = 117/117 (100%)
Strand = Plus / Minus
Query: 1 cctttaatattcttcccacggctttcttgagcttcgtatgcggatctgttagcggtgcga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 cctttaatattcttcccacggctttcttgagcttcgtatgcggatctgttagcggtgcga 71
Query: 61 tctgtcgccaacactcccgatcgggaagttcaagaaagccgtggaaaaatatgagag 117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 tctgtcgccaacactcccgatcgggaagttcaagaaagccgtggaaaaatatgagag 14
>39380_pab-MIR396b:mirbase
Length = 116
Score = 58.0 bits (29), Expect = 2e-09
Identities = 87/106 (82%), Gaps = 4/106 (3%)
Strand = Plus / Minus
Query: 13 ttcccacggctttcttgagcttcgtatgcggatctgttagcggtgcgatctgtcgccaac 72
|||||||||||||||||| ||| | ||||||||||| || ||||||| | |||||||
Sbjct: 106 ttcccacggctttcttgatcttgtcacccggatctgttatcgatgcgatcggccgccaac 47
Query: 73 actcccgatcg----ggaagttcaagaaagccgtggaaaaatatga 114
| || ||||| | ||||||||||||||||||||||| |||||
Sbjct: 46 agacctgatcgtgaagtaagttcaagaaagccgtggaaaactatga 1
>39878_aly-MIR396b:mirbase
Length = 188
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 86 aagttcaagaaagccgtggaaaaatatga 114
|||||||||||||| ||||||||||||||
Sbjct: 52 aagttcaagaaagctgtggaaaaatatga 24
>41142_tcc-MIR396e:mirbase
Length = 146
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 85 gaagttcaagaaagccgtggaaaa 108
||||||||||||||||||||||||
Sbjct: 103 gaagttcaagaaagccgtggaaaa 126
>41441_ptc-MIR396g:mirbase
Length = 168
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 86 aagttcaagaaagccgtggaaaa 108
|||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagccgtggaaaa 9
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 13 ttcccacggctttcttgagctt 34
||||||||||||||||||||||
Sbjct: 161 ttcccacggctttcttgagctt 140
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 90 tcaagaaagccgtggaaaaatatga 114
||||||||||||||| |||||||||
Sbjct: 144 tcaagaaagccgtgggaaaatatga 168
>41141_tcc-MIR396d:mirbase
Length = 182
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 86 aagttcaagaaagccgtggaaaa 108
|||||||||||||||||||||||
Sbjct: 41 aagttcaagaaagccgtggaaaa 19
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 13 ttcccacggctttcttgagcttc 35
|||||||||||||||||||||||
Sbjct: 161 ttcccacggctttcttgagcttc 139
>41440_ptc-MIR396f:mirbase
Length = 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 87 agttcaagaaagccgtggaaaa 108
||||||||||||||||||||||
Sbjct: 30 agttcaagaaagccgtggaaaa 9
>41438_ptc-MIR396d:mirbase
Length = 154
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 14 tcccacggctttcttgagcttc 35
||||||||||||||||||||||
Sbjct: 146 tcccacggctttcttgagcttc 125
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 84 ggaagttcaagaaagccgtggaaaa 108
|||||||||||||||| ||||||||
Sbjct: 33 ggaagttcaagaaagctgtggaaaa 9
>41437_ptc-MIR396c:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 84 ggaagttcaagaaagccgtggaaaaa 109
|||||||||||||||| |||||||||
Sbjct: 33 ggaagttcaagaaagctgtggaaaaa 8
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 85 gaagttcaagaaagccgtggaa 106
||||||||||||||||||||||
Sbjct: 73 gaagttcaagaaagccgtggaa 94
>41243_csi-MIR396c:mirbase
Length = 178
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 85 gaagttcaagaaagccgtggaaaaatatga 114
||||||||||||||| ||||||||| ||||
Sbjct: 34 gaagttcaagaaagctgtggaaaaacatga 5
>42811_zma-MIR396e:mirbase
Length = 166
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 11 tcttcccacggctttcttgagcttc 35
|||||||||||||||||||| ||||
Sbjct: 166 tcttcccacggctttcttgaccttc 142
>41795_bdi-MIR396e:mirbase
Length = 201
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 83 gggaagttcaagaaagccgtggaaa 107
||||||||||||||||| |||||||
Sbjct: 55 gggaagttcaagaaagctgtggaaa 31
>41242_csi-MIR396b:mirbase
Length = 134
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 87 agttcaagaaagccgtggaaaaata 111
||||||||||||| |||||||||||
Sbjct: 39 agttcaagaaagctgtggaaaaata 15
>41212_ccl-MIR396:mirbase
Length = 277
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 84 ggaagttcaagaaagccgtggaaaa 108
|||||||||||||||| ||||||||
Sbjct: 165 ggaagttcaagaaagctgtggaaaa 141
>40086_ath-MIR396b:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 86 aagttcaagaaagccgtggaaaaatatga 114
|||||||||||||| |||||||| |||||
Sbjct: 31 aagttcaagaaagctgtggaaaagtatga 3
>39741_smo-MIR396:mirbase
Length = 168
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 88 gttcaagaaagccgtggaaaa 108
|||||||||||||||||||||
Sbjct: 29 gttcaagaaagccgtggaaaa 9
>39426_pta-MIR396:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 86 aagttcaagaaagccgtggaaaaatatga 114
|||||||||||||| |||||||| |||||
Sbjct: 37 aagttcaagaaagctgtggaaaagtatga 9
>41661_vvi-MIR396b:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 85 gaagttcaagaaagccgtggaaaa 108
||||||||||||||| ||||||||
Sbjct: 35 gaagttcaagaaagctgtggaaaa 12
>41439_ptc-MIR396e:mirbase
Length = 145
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 85 gaagttcaagaaagccgtggaaaa 108
||||||||||||||| ||||||||
Sbjct: 32 gaagttcaagaaagctgtggaaaa 9
>40726_mtr-MIR396a:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 85 gaagttcaagaaagccgtggaaaa 108
||||||||||||||| ||||||||
Sbjct: 27 gaagttcaagaaagctgtggaaaa 4
>40476_gma-MIR396d:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 85 gaagttcaagaaagccgtggaaaa 108
||||||||||||||| ||||||||
Sbjct: 32 gaagttcaagaaagctgtggaaaa 9
>40475_gma-MIR396c:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 85 gaagttcaagaaagccgtggaaaa 108
||||||||||||||| ||||||||
Sbjct: 42 gaagttcaagaaagctgtggaaaa 19
>40474_gma-MIR396b:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 85 gaagttcaagaaagccgtggaaaa 108
||||||||||||||| ||||||||
Sbjct: 42 gaagttcaagaaagctgtggaaaa 19
>40379_rco-MIR396:mirbase
Length = 124
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 85 gaagttcaagaaagccgtggaaaa 108
||||||||||||||| ||||||||
Sbjct: 27 gaagttcaagaaagctgtggaaaa 4
