miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AC189657.2/5377-5278 51351:Brassica rapa subsp.
pekinensis
Length = 100
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 78 tcgcacgtgccctgcttctccagca 102
|||||||||||||||||||||||||
Sbjct: 32 tcgcacgtgccctgcttctccagca 8
>RF00647;MIR164;AC189579.2/50985-50886 51351:Brassica rapa subsp.
pekinensis
Length = 100
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 78 tcgcacgtgccctgcttctccagca 102
|||||||||||||||||||||||||
Sbjct: 32 tcgcacgtgccctgcttctccagca 8
>RF00647;MIR164;FM162584.1/200-286 3451:Aquilegia vulgaris
Length = 87
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 80 gcacgtgccctgcttctccagcatg 104
|||||||||||||||||||||||||
Sbjct: 30 gcacgtgccctgcttctccagcatg 6
>RF00647;MIR164;FM162588.1/798-884 310672:Cabomba aquatica
Length = 87
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 80 gcacgtgccctgcttctccagcatg 104
|||||||||||||||||||||||||
Sbjct: 30 gcacgtgccctgcttctccagcatg 6
>RF00647;MIR164;FM162589.1/376-455 310672:Cabomba aquatica
Length = 80
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 76 cctcgcacgtgccctgcttctcca 99
||||||||||||||||||||||||
Sbjct: 34 cctcgcacgtgccctgcttctcca 11
>RF00647;MIR164;AARH01005550.1/339945-339862 3694:Populus
trichocarpa
Length = 84
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 gcacgtgccctgcttctccagca 102
|||||||||||||||||||||||
Sbjct: 30 gcacgtgccctgcttctccagca 8
>RF00647;MIR164;AASG02000861.1/36470-36555 3988:Ricinus communis
(castor bean)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 gcacgtgccctgcttctccagca 102
|||||||||||||||||||||||
Sbjct: 30 gcacgtgccctgcttctccagca 8
>RF00647;MIR164;AASG02000423.1/48609-48498 3988:Ricinus communis
(castor bean)
Length = 112
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 gcacgtgccctgcttctccagca 102
|||||||||||||||||||||||
Sbjct: 30 gcacgtgccctgcttctccagca 8
>RF00647;MIR164;FM162585.1/105-191 3451:Aquilegia vulgaris
Length = 87
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 gcacgtgccctgcttctccagca 102
|||||||||||||||||||||||
Sbjct: 30 gcacgtgccctgcttctccagca 8
>RF00647;MIR164;ABXC01002969.1/79278-79187 4558:Sorghum bicolor
(sorghum)
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 gcacgtgccctgcttctccagca 102
|||||||||||||||||||||||
Sbjct: 30 gcacgtgccctgcttctccagca 8
>RF00647;MIR164;AP004257.3/77813-77720 39947:Oryza sativa Japonica
Group
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 80 gcacgtgccctgcttctccagca 102
|||||||||||||||||||||||
Sbjct: 30 gcacgtgccctgcttctccagca 8
>RF00647;MIR164;EU548763.1/160-261 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 78 tcgcacgtgccctgcttctcca 99
||||||||||||||||||||||
Sbjct: 32 tcgcacgtgccctgcttctcca 11
>RF00647;MIR164;AY871042.1/1-85 3694:Populus trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 80 gcacgtgccctgcttctccagc 101
||||||||||||||||||||||
Sbjct: 22 gcacgtgccctgcttctccagc 1
>RF00647;MIR164;AY728400.1/2-73 3694:Populus trichocarpa
Length = 72
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 80 gcacgtgccctgcttctccagc 101
||||||||||||||||||||||
Sbjct: 22 gcacgtgccctgcttctccagc 1
>RF00647;MIR164;ABXC01001632.1/56279-56101 4558:Sorghum bicolor
(sorghum)
Length = 179
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 80 gcacgtgccctgcttctccagc 101
||||||||||||||||||||||
Sbjct: 30 gcacgtgccctgcttctccagc 9
