miRNEST 2.0, an integrative microRNA resource :: BLAST
>47009_ath-miR396b:pmrd
Length = 135
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 72 agctcaagaaagctgtgggaaaacatg 98
|||||||||||||||||||||||||||
Sbjct: 106 agctcaagaaagctgtgggaaaacatg 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttccacagctttcttgaact 43
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54869_vvi-miR396b:pmrd
Length = 108
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 15 gccatgctcttccacagctttcttgaact 43
|||||||| ||||||||||||||||||||
Sbjct: 5 gccatgcttttccacagctttcttgaact 33
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 tcaagaaagctgtgggaaaacatgg 99
||||||||||||||||||| |||||
Sbjct: 81 tcaagaaagctgtgggaaaccatgg 105
>54868_vvi-miR396a:pmrd
Length = 116
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 17 catgctcttccacagctttcttgaacta 44
|||||| |||||||||||||||||||||
Sbjct: 7 catgcttttccacagctttcttgaacta 34
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agctcaagaaagctgtggga 91
||||||||||||||||||||
Sbjct: 86 agctcaagaaagctgtggga 105
>51738_ptc-miR396e:pmrd
Length = 145
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 agctcaagaaagctgtgggaaaacatgg 99
|||||||||||||||||||| |||||||
Sbjct: 118 agctcaagaaagctgtgggagaacatgg 145
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 catgctcttccacagctttcttgaact 43
|||||| ||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 72 agctcaagaaagctgtgggaaaacatg 98
|||||||||||||||||||| ||||||
Sbjct: 27 agctcaagaaagctgtgggagaacatg 1
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 17 catgctcttccacagctttcttgaact 43
|||||| ||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaact 115
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 72 agctcaagaaagctgtgggaaaacatg 98
|||||||||||||||||||| ||||||
Sbjct: 27 agctcaagaaagctgtgggagaacatg 1
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 17 catgctcttccacagctttcttgaact 43
|||||| ||||||||||||||||||||
Sbjct: 141 catgcttttccacagctttcttgaact 115
>51737_ptc-miR396d:pmrd
Length = 154
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 catgctcttccacagctttcttgaact 43
|||||| ||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 72 agctcaagaaagctgtgggaaaacatgg 99
||||||||||||| |||||| |||||||
Sbjct: 127 agctcaagaaagccgtgggagaacatgg 154
>48579_gma-miR396b:pmrd
Length = 126
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 catgctcttccacagctttcttgaact 43
|||||| ||||||||||||||||||||
Sbjct: 14 catgcttttccacagctttcttgaact 40
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agctcaagaaagctgtggga 91
||||||||||||||||||||
Sbjct: 88 agctcaagaaagctgtggga 107
>55079_zma-miR396h:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 2 tcttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaact 40
>54486_sbi-miR396b:pmrd
Length = 128
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaact 40
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 18 atgctcttccacagctttcttgaact 43
||||| ||||||||||||||||||||
Sbjct: 148 atgcttttccacagctttcttgaact 123
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 7 tcttccacagctttcttgaact 28
>51735_ptc-miR396b:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 14 tcttccacagctttcttgaact 35
>48580_gma-miR396c:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 18 atgctcttccacagctttcttgaact 43
||||| ||||||||||||||||||||
Sbjct: 15 atgcttttccacagctttcttgaact 40
>48578_gma-miR396a:pmrd
Length = 140
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 19 tcttccacagctttcttgaact 40
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 16 tcttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>54487_sbi-miR396c:pmrd
Length = 162
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 15 gccatgctcttccacagctttcttgaact 43
||||||| ||||||||||||||||||||
Sbjct: 12 gccatgcctttccacagctttcttgaact 40
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 15 gccatgctcttccacagctttcttgaact 43
|||||| | ||||||||||||||||||||
Sbjct: 102 gccatgtttttccacagctttcttgaact 74
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 75 tcaagaaagctgtgggaaaacatgg 99
||||||||||||||| |||||||||
Sbjct: 77 tcaagaaagctgtggaaaaacatgg 101
>51736_ptc-miR396c:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 15 gccatgctcttccacagctttcttgaact 43
|||||| | ||||||||||||||||||||
Sbjct: 2 gccatgtttttccacagctttcttgaact 30
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 75 tcaagaaagctgtgggaaaacatgg 99
||||||||||||||| |||||||||
Sbjct: 27 tcaagaaagctgtggaaaaacatgg 3
>48947_osa-miR396c:pmrd
Length = 141
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 15 gccatgctcttccacagctttcttgaact 43
||||||| ||||||||||||||||||||
Sbjct: 2 gccatgcctttccacagctttcttgaact 30
>48748_mtr-miR396a:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 19 tgctcttccacagctttcttgaact 43
|||| ||||||||||||||||||||
Sbjct: 1 tgcttttccacagctttcttgaact 25
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agctcaagaaagctgtggga 91
||||||||||||||||||||
Sbjct: 69 agctcaagaaagctgtggga 88
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttccacagctttcttgaact 43
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttccacagctttcttgaact 43
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttccacagctttcttgaact 43
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttccacagctttcttgaact 43
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55078_zma-miR396g:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttccacagctttcttgaact 43
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>55077_zma-miR396f:pmrd
Length = 166
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttccacagctttcttgaact 43
||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaact 22
>51564_pta-miR396:pmrd
Length = 119
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttccacagctttcttgaact 43
||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaact 36
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttccacagctttcttgaact 43
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttccacagctttcttgaact 43
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 24 ttccacagctttcttgaact 43
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48374_bna-miR396a:pmrd
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttccacagctttcttgaact 43
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46888_aqc-miR396b:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttccacagctttcttgaact 43
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 24 ttccacagctttcttgaact 43
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
