miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;CAAP02000221.1/3577-3471 29760:Vitis vinifera
Length = 107
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 73 gctcaagaaagctgtgggaaaacatggg 100
||||||||||||||||||||||||||||
Sbjct: 78 gctcaagaaagctgtgggaaaacatggg 105
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana (thale
cress)
Length = 136
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 72 agctcaagaaagctgtgggaaaacatg 98
|||||||||||||||||||||||||||
Sbjct: 106 agctcaagaaagctgtgggaaaacatg 132
>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
Length = 105
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 15 gccatgctcttccacagctttcttgaact 43
|||||||| ||||||||||||||||||||
Sbjct: 2 gccatgcttttccacagctttcttgaact 30
>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
Length = 87
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 72 agctcaagaaagctgtgggaaaacatggg 100
|||||||||||| ||||||||||||||||
Sbjct: 57 agctcaagaaagttgtgggaaaacatggg 85
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
trichocarpa
Length = 148
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 72 agctcaagaaagctgtgggaaaacatgg 99
|||||||||||||||||||| |||||||
Sbjct: 118 agctcaagaaagctgtgggagaacatgg 145
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 catgctcttccacagctttcttgaact 43
|||||| ||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
Length = 113
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 17 catgctcttccacagctttcttgaacta 44
|||||| |||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaacta 31
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
trichocarpa
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 catgctcttccacagctttcttgaact 43
|||||| ||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
(castor bean)
Length = 133
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 catgctcttccacagctttcttgaact 43
|||||| ||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 catgctcttccacagctttcttgaact 43
|||||| ||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 catgctcttccacagctttcttgaact 43
|||||| ||||||||||||||||||||
Sbjct: 4 catgcttttccacagctttcttgaact 30
>RF00648;MIR396;ABIM01023164.1/6366-6248 3649:Carica papaya
(papaya)
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>RF00648;MIR396;ABIM01011222.1/24137-24037 3649:Carica papaya
(papaya)
Length = 101
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>RF00648;MIR396;AC006250.4/85478-85629 3702:Arabidopsis thaliana
(thale cress)
Length = 152
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>RF00648;MIR396;AARH01002977.1/26105-26230 3694:Populus
trichocarpa
Length = 126
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>RF00648;MIR396;AARH01007577.1/181152-181286 3694:Populus
trichocarpa
Length = 135
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>RF00648;MIR396;AASG02007435.1/277-442 3988:Ricinus communis
(castor bean)
Length = 166
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>RF00648;MIR396;AASG02002614.1/17574-17698 3988:Ricinus communis
(castor bean)
Length = 125
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>RF00648;MIR396;AC153121.15/56895-56790 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>RF00648;MIR396;AP010531.1/68027-68126 34305:Lotus japonicus
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>RF00648;MIR396;AM489352.2/7330-7448 29760:Vitis vinifera
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>RF00648;MIR396;CAAP02002594.1/43203-43097 29760:Vitis vinifera
Length = 107
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>RF00648;MIR396;EU941272.1/182-300 4577:Zea mays
Length = 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>RF00648;MIR396;ABXC01006376.1/116039-116148 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>RF00648;MIR396;ABXC01002982.1/44228-44122 4558:Sorghum bicolor
(sorghum)
Length = 107
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>RF00648;MIR396;AAAA02018332.1/10514-10398 39946:Oryza sativa
Indica Group
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
>RF00648;MIR396;AP005056.2/134150-134304 39947:Oryza sativa
Japonica Group
Length = 155
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 22 tcttccacagctttcttgaact 43
||||||||||||||||||||||
Sbjct: 9 tcttccacagctttcttgaact 30
