miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AARH01003359.1/52522-52352 3694:Populus
trichocarpa
Length = 171
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttttccacggctttcttgaactt 31
|||||||||||||||||||||||
Sbjct: 9 ttttccacggctttcttgaactt 31
>RF00648;MIR396;AM481354.2/2056-2230 29760:Vitis vinifera
Length = 175
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 ttttccacggctttcttgaactt 31
|||||||||||||||||||||||
Sbjct: 9 ttttccacggctttcttgaactt 31
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
(thale cress)
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 gtcatagttttccacggctttcttgaactt 31
|||||| |||||||| ||||||||||||||
Sbjct: 2 gtcatacttttccacagctttcttgaactt 31
>RF00648;MIR396;AARH01003151.1/856908-856779 3694:Populus
trichocarpa
Length = 130
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 ttttccacggctttcttgaact 30
||||||||||||||||||||||
Sbjct: 9 ttttccacggctttcttgaact 30
>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
pine)
Length = 108
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 gtcatagttttccacggctttcttgaactt 31
|||||| |||||||| ||||||||||||||
Sbjct: 2 gtcatacttttccacagctttcttgaactt 31
