miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>39381_pab-MIR396c:mirbase
Length = 143
Score = 226 bits (114), Expect = 3e-60
Identities = 114/114 (100%)
Strand = Plus / Plus
Query: 1 ctctcatatttttccacggctttcttgaacttcccgatcgggagtgttggcgacagatcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14 ctctcatatttttccacggctttcttgaacttcccgatcgggagtgttggcgacagatcg 73
Query: 61 caccgctaacagatccgcatacgaagctcaagaaagccgtgggaagaatattaa 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 caccgctaacagatccgcatacgaagctcaagaaagccgtgggaagaatattaa 127
>39380_pab-MIR396b:mirbase
Length = 116
Score = 58.0 bits (29), Expect = 1e-09
Identities = 87/106 (82%), Gaps = 4/106 (3%)
Strand = Plus / Plus
Query: 4 tcatatttttccacggctttcttgaacttcc----cgatcgggagtgttggcgacagatc 59
||||| ||||||||||||||||||||||| | ||||| || |||||||| | ||||
Sbjct: 1 tcatagttttccacggctttcttgaacttacttcacgatcaggtctgttggcggccgatc 60
Query: 60 gcaccgctaacagatccgcatacgaagctcaagaaagccgtgggaa 105
||| || ||||||||||| | ||| ||||||||||||||||||
Sbjct: 61 gcatcgataacagatccgggtgacaagatcaagaaagccgtgggaa 106
>39878_aly-MIR396b:mirbase
Length = 188
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 tcatatttttccacggctttcttgaactt 32
|||||||||||||| ||||||||||||||
Sbjct: 24 tcatatttttccacagctttcttgaactt 52
>41142_tcc-MIR396e:mirbase
Length = 146
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 ttttccacggctttcttgaacttc 33
||||||||||||||||||||||||
Sbjct: 126 ttttccacggctttcttgaacttc 103
>41441_ptc-MIR396g:mirbase
Length = 168
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaactt 32
|||||||||||||||||||||||
Sbjct: 9 ttttccacggctttcttgaactt 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 aagctcaagaaagccgtgggaa 105
||||||||||||||||||||||
Sbjct: 140 aagctcaagaaagccgtgggaa 161
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 4 tcatatttttccacggctttcttga 28
||||||||| |||||||||||||||
Sbjct: 168 tcatattttcccacggctttcttga 144
>41141_tcc-MIR396d:mirbase
Length = 182
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaactt 32
|||||||||||||||||||||||
Sbjct: 19 ttttccacggctttcttgaactt 41
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 83 gaagctcaagaaagccgtgggaa 105
|||||||||||||||||||||||
Sbjct: 139 gaagctcaagaaagccgtgggaa 161
>41440_ptc-MIR396f:mirbase
Length = 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaact 31
||||||||||||||||||||||
Sbjct: 9 ttttccacggctttcttgaact 30
>41438_ptc-MIR396d:mirbase
Length = 154
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 gaagctcaagaaagccgtggga 104
||||||||||||||||||||||
Sbjct: 125 gaagctcaagaaagccgtggga 146
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaacttcc 34
|||||||| ||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaacttcc 33
>41437_ptc-MIR396c:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttttccacggctttcttgaacttcc 34
||||||||| ||||||||||||||||
Sbjct: 8 tttttccacagctttcttgaacttcc 33
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 12 ttccacggctttcttgaacttc 33
||||||||||||||||||||||
Sbjct: 94 ttccacggctttcttgaacttc 73
>41243_csi-MIR396c:mirbase
Length = 178
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 tcatatttttccacggctttcttgaacttc 33
|||| ||||||||| |||||||||||||||
Sbjct: 5 tcatgtttttccacagctttcttgaacttc 34
>42811_zma-MIR396e:mirbase
Length = 166
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 83 gaagctcaagaaagccgtgggaaga 107
|||| ||||||||||||||||||||
Sbjct: 142 gaaggtcaagaaagccgtgggaaga 166
>41795_bdi-MIR396e:mirbase
Length = 201
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 tttccacggctttcttgaacttccc 35
||||||| |||||||||||||||||
Sbjct: 31 tttccacagctttcttgaacttccc 55
>41242_csi-MIR396b:mirbase
Length = 134
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tatttttccacggctttcttgaact 31
||||||||||| |||||||||||||
Sbjct: 15 tatttttccacagctttcttgaact 39
>41212_ccl-MIR396:mirbase
Length = 277
Score = 42.1 bits (21), Expect = 9e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaacttcc 34
|||||||| ||||||||||||||||
Sbjct: 141 ttttccacagctttcttgaacttcc 165
>40086_ath-MIR396b:mirbase
Length = 135
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 tcatatttttccacggctttcttgaactt 32
||||| |||||||| ||||||||||||||
Sbjct: 3 tcatacttttccacagctttcttgaactt 31
>39741_smo-MIR396:mirbase
Length = 168
Score = 42.1 bits (21), Expect = 9e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaac 30
|||||||||||||||||||||
Sbjct: 9 ttttccacggctttcttgaac 29
>39426_pta-MIR396:mirbase
Length = 119
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 tcatatttttccacggctttcttgaactt 32
||||| |||||||| ||||||||||||||
Sbjct: 9 tcatacttttccacagctttcttgaactt 37
>41661_vvi-MIR396b:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaacttc 33
|||||||| |||||||||||||||
Sbjct: 12 ttttccacagctttcttgaacttc 35
>41439_ptc-MIR396e:mirbase
Length = 145
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaacttc 33
|||||||| |||||||||||||||
Sbjct: 9 ttttccacagctttcttgaacttc 32
>40726_mtr-MIR396a:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaacttc 33
|||||||| |||||||||||||||
Sbjct: 4 ttttccacagctttcttgaacttc 27
>40476_gma-MIR396d:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaacttc 33
|||||||| |||||||||||||||
Sbjct: 9 ttttccacagctttcttgaacttc 32
>40475_gma-MIR396c:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaacttc 33
|||||||| |||||||||||||||
Sbjct: 19 ttttccacagctttcttgaacttc 42
>40474_gma-MIR396b:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaacttc 33
|||||||| |||||||||||||||
Sbjct: 19 ttttccacagctttcttgaacttc 42
>40379_rco-MIR396:mirbase
Length = 124
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaacttc 33
|||||||| |||||||||||||||
Sbjct: 4 ttttccacagctttcttgaacttc 27
