miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;AM481354.2/2056-2230 29760:Vitis vinifera
Length = 175
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 4 tcatatttttccacggctttcttgaacttc 33
||||||||| ||||||||||||||||||||
Sbjct: 172 tcatattttcccacggctttcttgaacttc 143
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaactt 32
|||||||||||||||||||||||
Sbjct: 9 ttttccacggctttcttgaactt 31
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 80 tacgaagctcaagaaagccgtgggaa 105
||||||| ||||||||||||||||||
Sbjct: 140 tacgaagttcaagaaagccgtgggaa 165
>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
Length = 87
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 3 ctcatatttttccacggctttcttgaactt 32
||||||||||||||| ||||||||||||||
Sbjct: 2 ctcatatttttccacagctttcttgaactt 31
>RF00648;MIR396;AARH01003359.1/52522-52352 3694:Populus
trichocarpa
Length = 171
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaactt 32
|||||||||||||||||||||||
Sbjct: 9 ttttccacggctttcttgaactt 31
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 84 aagctcaagaaagccgtgggaa 105
||||||||||||||||||||||
Sbjct: 140 aagctcaagaaagccgtgggaa 161
>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 83 gaagctcaagaaagccgtgggaa 105
|||||||||||||||||||||||
Sbjct: 76 gaagctcaagaaagccgtgggaa 98
>RF00648;MIR396;FJ647794.1/154-54 64478:Actinidia arguta
Length = 101
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 6 atatttttccacggctttcttgaactt 32
|||||||||||||| ||||||||||||
Sbjct: 5 atatttttccacggttttcttgaactt 31
>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
(papaya)
Length = 159
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 tcatatttttccacggctttcttgaacttc 33
|||| ||||||||| |||||||||||||||
Sbjct: 3 tcatgtttttccacagctttcttgaacttc 32
>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
trichocarpa
Length = 105
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ttccacggctttcttgaacttc 33
||||||||||||||||||||||
Sbjct: 11 ttccacggctttcttgaacttc 32
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 9 tttttccacggctttcttgaacttcc 34
||||||||| ||||||||||||||||
Sbjct: 97 tttttccacagctttcttgaacttcc 72
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus trichocarpa
Length = 157
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 gaagctcaagaaagccgtggga 104
||||||||||||||||||||||
Sbjct: 125 gaagctcaagaaagccgtggga 146
>RF00648;MIR396;AARH01003151.1/856908-856779 3694:Populus
trichocarpa
Length = 130
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttttccacggctttcttgaact 31
||||||||||||||||||||||
Sbjct: 9 ttttccacggctttcttgaact 30
>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
Length = 261
Score = 44.1 bits (22), Expect = 4e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 4 tcatatttttccacggctttcttgaacttc 33
|||| ||||||||| |||||||||||||||
Sbjct: 3 tcatgtttttccacagctttcttgaacttc 32
