miRNEST 2.0, an integrative microRNA resource :: BLAST
>39381_pab-MIR396c:mirbase
Length = 143
Score = 63.9 bits (32), Expect = 2e-11
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 11 ttcccacggcttgcttgagcttcttatccggatctgttagcggt 54
|||||||||||| |||||||||| ||| ||||||||||||||||
Sbjct: 118 ttcccacggctttcttgagcttcgtatgcggatctgttagcggt 75
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 54 tcgggaagttcaagaaagccgtggaaaagtatga 87
|||||||||||||||||||||||||||| |||||
Sbjct: 50 tcgggaagttcaagaaagccgtggaaaaatatga 17
>41142_tcc-MIR396e:mirbase
Length = 146
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 58 gaagttcaagaaagccgtggaaaagtatgaca 89
||||||||||||||||||||||||| ||||||
Sbjct: 103 gaagttcaagaaagccgtggaaaagcatgaca 134
>39426_pta-MIR396:mirbase
Length = 119
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 59 aagttcaagaaagccgtggaaaagtatgaca 89
|||||||||||||| ||||||||||||||||
Sbjct: 37 aagttcaagaaagctgtggaaaagtatgaca 7
>40086_ath-MIR396b:mirbase
Length = 135
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 59 aagttcaagaaagccgtggaaaagtatgac 88
|||||||||||||| |||||||||||||||
Sbjct: 31 aagttcaagaaagctgtggaaaagtatgac 2
>39380_pab-MIR396b:mirbase
Length = 116
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 59 aagttcaagaaagccgtggaaaagtatga 87
||||||||||||||||||||||| |||||
Sbjct: 29 aagttcaagaaagccgtggaaaactatga 1
Score = 50.1 bits (25), Expect = 3e-07
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 1 cctctatattttcccacggcttgcttgagcttcttatccggatctgtta 49
|||||||| ||||||||||||| ||||| ||| | | ||||||||||||
Sbjct: 116 cctctataatttcccacggctttcttgatcttgtcacccggatctgtta 68
>41441_ptc-MIR396g:mirbase
Length = 168
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 59 aagttcaagaaagccgtggaaaag 82
||||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagccgtggaaaag 8
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 atattttcccacggcttgcttgagctt 32
||||||||||||||||| |||||||||
Sbjct: 166 atattttcccacggctttcttgagctt 140
>41438_ptc-MIR396d:mirbase
Length = 154
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 57 ggaagttcaagaaagccgtggaaaagtatgac 88
|||||||||||||||| ||||||||| |||||
Sbjct: 33 ggaagttcaagaaagctgtggaaaagcatgac 2
>41212_ccl-MIR396:mirbase
Length = 277
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 57 ggaagttcaagaaagccgtggaaaagtatgac 88
|||||||||||||||| ||||||||| |||||
Sbjct: 165 ggaagttcaagaaagctgtggaaaagcatgac 134
>41141_tcc-MIR396d:mirbase
Length = 182
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 59 aagttcaagaaagccgtggaaaag 82
||||||||||||||||||||||||
Sbjct: 41 aagttcaagaaagccgtggaaaag 18
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 9 ttttcccacggcttgcttgagcttc 33
|||||||||||||| ||||||||||
Sbjct: 163 ttttcccacggctttcttgagcttc 139
>41439_ptc-MIR396e:mirbase
Length = 145
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 58 gaagttcaagaaagccgtggaaaagtatgac 88
||||||||||||||| ||||||||| |||||
Sbjct: 32 gaagttcaagaaagctgtggaaaagcatgac 2
>40476_gma-MIR396d:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 58 gaagttcaagaaagccgtggaaaagtatgac 88
||||||||||||||| ||||||||| |||||
Sbjct: 32 gaagttcaagaaagctgtggaaaagcatgac 2
>40474_gma-MIR396b:mirbase
Length = 126
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 58 gaagttcaagaaagccgtggaaaagtatgac 88
||||||||||||||| ||||||||| |||||
Sbjct: 42 gaagttcaagaaagctgtggaaaagcatgac 12
>39741_smo-MIR396:mirbase
Length = 168
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 61 gttcaagaaagccgtggaaaagtatga 87
|||||||||||||||||||||| ||||
Sbjct: 29 gttcaagaaagccgtggaaaagcatga 3
>41660_vvi-MIR396a:mirbase
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 60 agttcaagaaagccgtggaaaagtatgaca 89
||||||||||||| ||||||||| ||||||
Sbjct: 33 agttcaagaaagctgtggaaaagcatgaca 4
>41440_ptc-MIR396f:mirbase
Length = 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 60 agttcaagaaagccgtggaaaa 81
||||||||||||||||||||||
Sbjct: 30 agttcaagaaagccgtggaaaa 9
>41437_ptc-MIR396c:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 gaagttcaagaaagccgtggaa 79
||||||||||||||||||||||
Sbjct: 73 gaagttcaagaaagccgtggaa 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 57 ggaagttcaagaaagccgtggaaaa 81
|||||||||||||||| ||||||||
Sbjct: 33 ggaagttcaagaaagctgtggaaaa 9
>39878_aly-MIR396b:mirbase
Length = 188
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 59 aagttcaagaaagccgtggaaaagtatgac 88
|||||||||||||| |||||||| ||||||
Sbjct: 52 aagttcaagaaagctgtggaaaaatatgac 23
>41795_bdi-MIR396e:mirbase
Length = 201
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 56 gggaagttcaagaaagccgtggaaa 80
||||||||||||||||| |||||||
Sbjct: 55 gggaagttcaagaaagctgtggaaa 31
>41661_vvi-MIR396b:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 58 gaagttcaagaaagccgtggaaaag 82
||||||||||||||| |||||||||
Sbjct: 35 gaagttcaagaaagctgtggaaaag 11
>40726_mtr-MIR396a:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 58 gaagttcaagaaagccgtggaaaag 82
||||||||||||||| |||||||||
Sbjct: 27 gaagttcaagaaagctgtggaaaag 3
>40475_gma-MIR396c:mirbase
Length = 117
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 58 gaagttcaagaaagccgtggaaaag 82
||||||||||||||| |||||||||
Sbjct: 42 gaagttcaagaaagctgtggaaaag 18
>40379_rco-MIR396:mirbase
Length = 124
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 58 gaagttcaagaaagccgtggaaaag 82
||||||||||||||| |||||||||
Sbjct: 27 gaagttcaagaaagctgtggaaaag 3
>41243_csi-MIR396c:mirbase
Length = 178
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 58 gaagttcaagaaagccgtggaaaa 81
||||||||||||||| ||||||||
Sbjct: 34 gaagttcaagaaagctgtggaaaa 11
>41140_tcc-MIR396c:mirbase
Length = 152
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 59 aagttcaagaaagccgtggaaaag 82
|||||||||||||| |||||||||
Sbjct: 41 aagttcaagaaagctgtggaaaag 18
