miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly
pine)
Length = 108
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 59 aagttcaagaaagccgtggaaaagtatgaca 89
|||||||||||||| ||||||||||||||||
Sbjct: 31 aagttcaagaaagctgtggaaaagtatgaca 1
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
(thale cress)
Length = 136
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 59 aagttcaagaaagccgtggaaaagtatgac 88
|||||||||||||| |||||||||||||||
Sbjct: 31 aagttcaagaaagctgtggaaaagtatgac 2
>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
Length = 108
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 6 atattttcccacggcttgcttgagcttct 34
||||||||||||||||| |||||||||||
Sbjct: 103 atattttcccacggctttcttgagcttct 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 58 gaagttcaagaaagccgtggaaaagtatgac 88
||||||||||||||| ||||||||| |||||
Sbjct: 32 gaagttcaagaaagctgtggaaaagcatgac 2
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
trichocarpa
Length = 157
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 57 ggaagttcaagaaagccgtggaaaagtatgac 88
|||||||||||||||| ||||||||| |||||
Sbjct: 33 ggaagttcaagaaagctgtggaaaagcatgac 2
>RF00648;MIR396;AARH01003359.1/52522-52352 3694:Populus
trichocarpa
Length = 171
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 59 aagttcaagaaagccgtggaaaag 82
||||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagccgtggaaaag 8
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 6 atattttcccacggcttgcttgagctt 32
||||||||||||||||| |||||||||
Sbjct: 166 atattttcccacggctttcttgagctt 140
>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
(castor bean)
Length = 133
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 58 gaagttcaagaaagccgtggaaaagtatgaca 89
||||||||||||||| ||||||||| ||||||
Sbjct: 32 gaagttcaagaaagctgtggaaaagcatgaca 1
>RF00648;MIR396;AM481354.2/2056-2230 29760:Vitis vinifera
Length = 175
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 59 aagttcaagaaagccgtggaaaag 82
||||||||||||||||||||||||
Sbjct: 31 aagttcaagaaagccgtggaaaag 8
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 58 gaagttcaagaaagccgtggaaaagtatga 87
|||||||||||||||||||| ||| |||||
Sbjct: 143 gaagttcaagaaagccgtgggaaaatatga 172
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
trichocarpa
Length = 148
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 58 gaagttcaagaaagccgtggaaaagtatgac 88
||||||||||||||| ||||||||| |||||
Sbjct: 32 gaagttcaagaaagctgtggaaaagcatgac 2
>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
trichocarpa
Length = 105
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 58 gaagttcaagaaagccgtggaaaagtatgac 88
|||||||||||||||||||||| || |||||
Sbjct: 32 gaagttcaagaaagccgtggaatagcatgac 2
>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 58 gaagttcaagaaagccgtggaaaagtatgac 88
||||||||||||||| ||||||||| |||||
Sbjct: 32 gaagttcaagaaagctgtggaaaagcatgac 2
>RF00648;MIR396;AARH01003151.1/856908-856779 3694:Populus
trichocarpa
Length = 130
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 60 agttcaagaaagccgtggaaaa 81
||||||||||||||||||||||
Sbjct: 30 agttcaagaaagccgtggaaaa 9
>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 60 agttcaagaaagccgtggaaaagtatgaca 89
||||||||||||| ||||||||| ||||||
Sbjct: 30 agttcaagaaagctgtggaaaagcatgaca 1
