miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;FJ085642.1/369-262 3352:Pinus taeda (loblolly pine)
Length = 108
Score = 206 bits (104), Expect = 5e-53
Identities = 107/108 (99%)
Strand = Plus / Plus
Query: 15 tgtcatacttttccacagctttcttgaactttacgtgtacgggacgaggagattctgatt 74
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1 tgtcatacttttccacagctttcttgaactttacgtgtacgggacgaggagattctgaat 60
Query: 75 tctacgtctgcgattaaagttcaagaaaactgtgggaaagcatggtag 122
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tctacgtctgcgattaaagttcaagaaaactgtgggaaagcatggtag 108
>RF00648;MIR396;FM164183.1/100-235 3702:Arabidopsis thaliana
(thale cress)
Length = 136
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 16 gtcatacttttccacagctttcttgaacttt 46
|||||||||||||||||||||||||||||||
Sbjct: 2 gtcatacttttccacagctttcttgaacttt 32
>RF00648;MIR396;AASG02001279.1/18109-18241 3988:Ricinus communis
(castor bean)
Length = 133
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 15 tgtcatacttttccacagctttcttgaactt 45
|||||| ||||||||||||||||||||||||
Sbjct: 1 tgtcatgcttttccacagctttcttgaactt 31
>RF00648;MIR396;AARH01007577.1/188194-188047 3694:Populus
trichocarpa
Length = 148
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 16 gtcatacttttccacagctttcttgaactt 45
||||| ||||||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaactt 31
>RF00648;MIR396;AARH01002977.1/33014-32858 3694:Populus
trichocarpa
Length = 157
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 16 gtcatacttttccacagctttcttgaactt 45
||||| ||||||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaactt 31
>RF00648;MIR396;AC153121.15/48150-48253 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 16 gtcatacttttccacagctttcttgaactt 45
||||| ||||||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaactt 31
>RF00648;MIR396;AP010531.1/73143-73036 34305:Lotus japonicus
Length = 108
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 16 gtcatacttttccacagctttcttgaactt 45
||||| ||||||||||||||||||||||||
Sbjct: 2 gtcatgcttttccacagctttcttgaactt 31
>RF00648;MIR396;CAAP02000554.1/84783-84895 29760:Vitis vinifera
Length = 113
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 tgtcatacttttccacagctttcttgaact 44
|||||| |||||||||||||||||||||||
Sbjct: 1 tgtcatgcttttccacagctttcttgaact 30
>RF00648;MIR396;AC226039.1/69968-70054 4641:Musa acuminata
Length = 87
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 17 tcatacttttccacagctttcttgaactt 45
||||| |||||||||||||||||||||||
Sbjct: 3 tcatatttttccacagctttcttgaactt 31
>RF00648;MIR396;AM489352.2/13768-13664 29760:Vitis vinifera
Length = 105
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 22 cttttccacagctttcttgaactt 45
||||||||||||||||||||||||
Sbjct: 8 cttttccacagctttcttgaactt 31
>RF00648;MIR396;ABIM01011222.1/17767-17925 3649:Carica papaya
(papaya)
Length = 159
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttttccacagctttcttgaactt 45
|||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaactt 31
>RF00648;MIR396;AARH01001850.1/327743-327639 3694:Populus
trichocarpa
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 23 ttttccacagctttcttgaactt 45
|||||||||||||||||||||||
Sbjct: 96 ttttccacagctttcttgaactt 74
>RF00648;MIR396;AC209588.1/2779-2519 4081:Solanum lycopersicum
Length = 261
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 23 ttttccacagctttcttgaactt 45
|||||||||||||||||||||||
Sbjct: 9 ttttccacagctttcttgaactt 31
>RF00648;MIR396;ABXC01002982.1/36897-37040 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 tttccacagctttcttgaactt 45
||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaactt 31
>RF00648;MIR396;AP008208.1/34306506-34306365 39947:Oryza sativa
Japonica Group
Length = 142
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 tttccacagctttcttgaactt 45
||||||||||||||||||||||
Sbjct: 10 tttccacagctttcttgaactt 31
